This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
Anticodon = CTG
HIT:
7 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.809448 (2 seq.)
>SRA1002439
SRR001323.146993
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
10
83
+
Gln
CTG
[SRA]
>SRA1002498
SRR001325.15266
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
117
44
-
Gln
CTG
[SRA]
Identical group No.809449 (1 seq.)
>SRA1002508
SRR001325.48416
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
33
105
+
Gln
CTG
[SRA]
Identical group No.812643 (1 seq.)
>SRA1002468
SRR001324.43953
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
92
19
-
Gln
CTG
[SRA]
Identical group No.828353 (1 seq.)
>SRA1002349
SRR001322.52766
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
38
111
+
Gln
CTG
[SRA]
Identical group No.833465 (2 seq.)
>SRA1002396
SRR001323.47395
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
108
35
-
Gln
CTG
[SRA]
>SRA1002400
SRR001323.53330
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
13
86
+
Gln
CTG
[SRA]
Identical group No.833466 (1 seq.)
>SRA1002397
SRR001323.48082
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
3
76
+
Gln
CTG
[SRA]
Identical group No.833467 (1 seq.)
>SRA1002412
SRR001323.74613
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
75
1
-
Gln
CTG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK