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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
Anticodon = CTG
HIT:
9 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.480473 (2 seq.)
>WENV170647716
JREQ01003039
[JREQ] marine sediment metagenome; clay from marine sediments 31 meters below sea floor depth collected from drilling site U1352C
343
418
+
Gln
CTG
[ENA]
¢þ
>SRA1002370
SRR001322.100566
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
9
84
+
Gln
CTG
[SRA]
Identical group No.786804 (11 seq.)
>W141066476
ARPL01000003
Chloroflexota
Dehalococcoidia bacterium SCGC AB-539-J10 [ARPL]
42855
42928
+
Gln
CTG
[ENA]
¡û
>WENV170016725
BARS01004345
[BARS] marine sediment metagenome; marine subsurface sediment at 0.8 meters below seafloor (mbsf), off the Shimokita Peninsula
772
845
+
Gln
CTG
[ENA]
¢þ
>WENV170017818
BARU01029496
[BARU] marine sediment metagenome; marine subsurface sediment at 18.6 meters below seafloor (mbsf), off the Shimokita Peninsula
299
226
-
Gln
CTG
[ENA]
¢þ
>WENV170647804
JREQ01005374
[JREQ] marine sediment metagenome; clay from marine sediments 31 meters below sea floor depth collected from drilling site U1352C
14413
14340
-
Gln
CTG
[ENA]
¢þ
>WENV170647828
JRER01000030
[JRER] marine sediment metagenome; clay from marine sediments 136 meters below sea floor depth collected from drilling site U1352C
7164
7237
+
Gln
CTG
[ENA]
¢þ
>WENV170647873
JRER01000709
[JRER] marine sediment metagenome; clay from marine sediments 136 meters below sea floor depth collected from drilling site U1352C
2628
2701
+
Gln
CTG
[ENA]
¢þ
>WENV170648133
JRER01005480
[JRER] marine sediment metagenome; clay from marine sediments 136 meters below sea floor depth collected from drilling site U1352C
1303
1230
-
Gln
CTG
[ENA]
¢þ
>WENV170648138
JRER01005588
[JRER] marine sediment metagenome; clay from marine sediments 136 meters below sea floor depth collected from drilling site U1352C
253
326
+
Gln
CTG
[ENA]
¢þ
>SRA1002501
SRR001325.18041
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
96
23
-
Gln
CTG
[SRA]
>SRA1002503
SRR001325.19054
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
96
23
-
Gln
CTG
[SRA]
>SRA1002519
SRR001325.76976
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
29
102
+
Gln
CTG
[SRA]
Identical group No.809448 (2 seq.)
>SRA1002439
SRR001323.146993
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
10
83
+
Gln
CTG
[SRA]
>SRA1002498
SRR001325.15266
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
117
44
-
Gln
CTG
[SRA]
Identical group No.809449 (1 seq.)
>SRA1002508
SRR001325.48416
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
33
105
+
Gln
CTG
[SRA]
Identical group No.812643 (1 seq.)
>SRA1002468
SRR001324.43953
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
92
19
-
Gln
CTG
[SRA]
Identical group No.828353 (1 seq.)
>SRA1002349
SRR001322.52766
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
38
111
+
Gln
CTG
[SRA]
Identical group No.833465 (2 seq.)
>SRA1002396
SRR001323.47395
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
108
35
-
Gln
CTG
[SRA]
>SRA1002400
SRR001323.53330
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
13
86
+
Gln
CTG
[SRA]
Identical group No.833466 (1 seq.)
>SRA1002397
SRR001323.48082
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
3
76
+
Gln
CTG
[SRA]
Identical group No.833467 (1 seq.)
>SRA1002412
SRR001323.74613
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
75
1
-
Gln
CTG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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