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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
Anticodon = GAC
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.244002 (2 seq.)
>WENV170647692
JREQ01002505
[JREQ] marine sediment metagenome; clay from marine sediments 31 meters below sea floor depth collected from drilling site U1352C
5695
5618
-
Val
GAC
[ENA]
¢þ
>SRA1002542
SRR001326.29722
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
89
14
-
Val
GAC
[SRA]
Identical group No.266331 (1 seq.)
>SRA1002361
SRR001322.71659
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
32
109
+
Val
GAC
[SRA]
Identical group No.371916 (1 seq.)
>SRA1002504
SRR001325.20424
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
6
81
+
Val
GAC
[SRA]
Identical group No.378771 (3 seq.)
>WENV170017630
BARU01006068
[BARU] marine sediment metagenome; marine subsurface sediment at 18.6 meters below seafloor (mbsf), off the Shimokita Peninsula
442
366
-
Val
GAC
[ENA]
¢þ
>WENV170647833
JRER01000132
[JRER] marine sediment metagenome; clay from marine sediments 136 meters below sea floor depth collected from drilling site U1352C
6529
6453
-
Val
GAC
[ENA]
¢þ
>SRA1002390
SRR001323.38214
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
103
27
-
Val
GAC
[SRA]
Identical group No.437873 (2 seq.)
>WENV170017377
BART01022389
[BART] marine sediment metagenome; marine subsurface sediment at 5.1 meters below seafloor (mbsf), off the Shimokita Peninsula
349
425
+
Val
GAC
[ENA]
¢þ
>SRA1002402
SRR001323.57996
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
90
14
-
Val
GAC
[SRA]
Identical group No.628136 (1 seq.)
>SRA1002371
SRR001322.100780
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
10
85
+
Val
GAC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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