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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
Anticodon = GAC
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.158370 (4 seq.)
>WENV170647692
JREQ01002505
[JREQ] marine sediment metagenome; clay from marine sediments 31 meters below sea floor depth collected from drilling site U1352C
5695
5618
-
Val
GAC
[ENA]
¢þ
>WENV170647823
JREQ01006418
[JREQ] marine sediment metagenome; clay from marine sediments 31 meters below sea floor depth collected from drilling site U1352C
941
1018
+
Val
GAC
[ENA]
¢þ
>SRA1002542
SRR001326.29722
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
89
14
-
Val
GAC
[SRA]
>SRA1013648
SRR023396.342692
Brazos-Trinity Basin Sediment Metagenome: IODP Site 1320 (SRP001095)
183
260
+
Val
GAC
[SRA]
Identical group No.163903 (4 seq.)
>WENV181412795
OGCK01008759
[OGCK] hot springs metagenome; hot spring sediment
962
885
-
Val
GAC
[ENA]
¢þ
>WENV181413638
OGCK01101691
[OGCK] hot springs metagenome; hot spring sediment
586
509
-
Val
GAC
[ENA]
¢þ
>WENV170647951
JRER01001638
[JRER] marine sediment metagenome; clay from marine sediments 136 meters below sea floor depth collected from drilling site U1352C
3184
3107
-
Val
GAC
[ENA]
¢þ
>SRA1002361
SRR001322.71659
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
32
109
+
Val
GAC
[SRA]
Identical group No.219731 (9 seq.)
>W1710798775
LJTX01000131
Chloroflexota
Dehalococcoidia bacterium SG8_51_3 [LJTX]
5646
5722
+
Val
GAC
[ENA]
¡û
>W1711408565
MGMV01000044
Chloroflexota
Chloroflexi bacterium RBG_13_52_14 [MGMV]
6206
6282
+
Val
GAC
[ENA]
¡û
>W1711408852
MGNK01000041
Chloroflexota
Chloroflexi bacterium RBG_16_50_9 [MGNK]
10844
10920
+
Val
GAC
[ENA]
¡û
>WENV170017377
BART01022389
[BART] marine sediment metagenome; marine subsurface sediment at 5.1 meters below seafloor (mbsf), off the Shimokita Peninsula
349
425
+
Val
GAC
[ENA]
¢þ
>SRA1002402
SRR001323.57996
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
90
14
-
Val
GAC
[SRA]
>W10116179
ADNP01000009
Chloroflexota
Dehalogenimonas lykanthroporepellens BL-DC-9 [ADNP]
24187
24111
-
Val
GAC
[ENA]
¡û
>C10105331
CP002084
Chloroflexota
Dehalogenimonas lykanthroporepellens BL-DC-9 [CP002084]
474081
474005
-
Val
GAC
[Ensembl]
¡û
>W11120848
ADNP01000009
Chloroflexota
Dehalogenimonas lykanthroporepellens BL-DC-9 [ADNP]
24187
24111
-
Val
GAC
[ENA]
¡û
>W1610662732
LJTX01000131
Chloroflexota
Dehalococcoidia bacterium SG8_51_3 [LJTX]
5646
5722
+
Val
GAC
[ENA]
¡û
Identical group No.237812 (7 seq.)
>WENV183662933
ORJL010239105
[ORJL] groundwater metagenome; groundwater
1569
1493
-
Val
GAC
[ENA]
¢þ
>WENV183687321
ORMF011129238
[ORMF] groundwater metagenome; groundwater
364
440
+
Val
GAC
[ENA]
¢þ
>WENV170017630
BARU01006068
[BARU] marine sediment metagenome; marine subsurface sediment at 18.6 meters below seafloor (mbsf), off the Shimokita Peninsula
442
366
-
Val
GAC
[ENA]
¢þ
>WENV170389096
CETZ01232471
[CETZ] marine metagenome genome assembly TARA_132_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
79
3
-
Val
GAC
[ENA]
¢þ
>WENV170647833
JRER01000132
[JRER] marine sediment metagenome; clay from marine sediments 136 meters below sea floor depth collected from drilling site U1352C
6529
6453
-
Val
GAC
[ENA]
¢þ
>SRA1002390
SRR001323.38214
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
103
27
-
Val
GAC
[SRA]
>SRA1002504
SRR001325.20424
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
6
81
+
Val
GAC
[SRA]
Identical group No.385137 (1 seq.)
>SRA1002371
SRR001322.100780
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
10
85
+
Val
GAC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK