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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
Anticodon = GAG
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.110540 (1 seq.)
>SRA1002391
SRR001323.38675
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
26
113
+
Leu
GAG
[SRA]
Identical group No.136903 (2 seq.)
>SRA1002473
SRR001324.57030
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
15
101
+
Leu
GAG
[SRA]
>SRA1002486
SRR001324.78642
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
15
101
+
Leu
GAG
[SRA]
Identical group No.150965 (1 seq.)
>SRA1002418
SRR001323.90372
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
88
2
-
Leu
GAG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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