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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
Anticodon = GAG
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.58524 (6 seq.)
>WENV170647645
JREQ01001024
[JREQ] marine sediment metagenome; clay from marine sediments 31 meters below sea floor depth collected from drilling site U1352C
58
143
+
Leu
GAG
[ENA]
¢þ
>WENV170647882
JRER01000841
[JRER] marine sediment metagenome; clay from marine sediments 136 meters below sea floor depth collected from drilling site U1352C
4937
5024
+
Leu
GAG
[ENA]
¢þ
>WENV170648002
JRER01002180
[JRER] marine sediment metagenome; clay from marine sediments 136 meters below sea floor depth collected from drilling site U1352C
2426
2341
-
Leu
GAG
[ENA]
¢þ
>WENV170648087
JRER01004554
[JRER] marine sediment metagenome; clay from marine sediments 136 meters below sea floor depth collected from drilling site U1352C
3492
3579
+
Leu
GAG
[ENA]
¢þ
>SRA1002391
SRR001323.38675
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
26
113
+
Leu
GAG
[SRA]
>W1610927870
LUCD01000094
Unclassified
Candidatus Bathyarchaeota archaeon B26-1 [LUCD]
5477
5564
+
Leu
GAG
[ENA]
¡û
Identical group No.87878 (5 seq.)
>WENV180074229
MPMA02129414
[MPMA] marine metagenome; 180 m water sample filtered on 0.2 um supor filter
220
306
+
Leu
GAG
[ENA]
¢þ
>WENV183671193
ORJL011032611
[ORJL] groundwater metagenome; groundwater
1762
1848
+
Leu
GAG
[ENA]
¢þ
>WENV170017305
BART01010872
[BART] marine sediment metagenome; marine subsurface sediment at 5.1 meters below seafloor (mbsf), off the Shimokita Peninsula
414
500
+
Leu
GAG
[ENA]
¢þ
>WENV170202808
CEPS01007984
[CEPS] marine metagenome genome assembly TARA_038_MES_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
129
45
-
Leu
GAG
[ENA]
¢þ
>SRA1002418
SRR001323.90372
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
88
2
-
Leu
GAG
[SRA]
Identical group No.89555 (2 seq.)
>SRA1002473
SRR001324.57030
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
15
101
+
Leu
GAG
[SRA]
>SRA1002486
SRR001324.78642
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
15
101
+
Leu
GAG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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