tRNA genes clustered and arranged according to each identical group

Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)

Anticodon = GCA

HIT: 12 Group(s).
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Sort by Identical group No. Sort by the number of tRNAs in the Identical group
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Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Identical group No.242927 (3 seq.)
>SRA1002335 SRR001322.15936 Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183) 14 90 + Cys GCA [SRA]
>SRA1002483 SRR001324.73535 Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183) 107 31 - Cys GCA [SRA]
>SRA1002484 SRR001324.74437 Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183) 107 31 - Cys GCA [SRA]
Identical group No.268534 (1 seq.)
>SRA1002364 SRR001322.77033 Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183) 1 74 + Cys GCA [SRA]
Identical group No.298699 (6 seq.)
>WENV170017958 BARV01001425 [BARV] marine sediment metagenome; marine subsurface sediment at 48.5 meters below seafloor (mbsf), off the Shimokita Peninsula 120 192 + Cys GCA [ENA] ¢þ
>WENV170017961 BARV01001425 [BARV] marine sediment metagenome; marine subsurface sediment at 48.5 meters below seafloor (mbsf), off the Shimokita Peninsula 1324 1252 - Cys GCA [ENA] ¢þ
>WENV170018165 BARV01020810 [BARV] marine sediment metagenome; marine subsurface sediment at 48.5 meters below seafloor (mbsf), off the Shimokita Peninsula 500 572 + Cys GCA [ENA] ¢þ
>WENV170018174 BARV01021825 [BARV] marine sediment metagenome; marine subsurface sediment at 48.5 meters below seafloor (mbsf), off the Shimokita Peninsula 518 446 - Cys GCA [ENA] ¢þ
>WENV170018255 BARV01031191 [BARV] marine sediment metagenome; marine subsurface sediment at 48.5 meters below seafloor (mbsf), off the Shimokita Peninsula 603 531 - Cys GCA [ENA] ¢þ
>SRA1002373 SRR001322.110064 Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183) 102 30 - Cys GCA [SRA]
Identical group No.300487 (5 seq.)
>WENV170647670 JREQ01001846 [JREQ] marine sediment metagenome; clay from marine sediments 31 meters below sea floor depth collected from drilling site U1352C 73 1 - Cys GCA [ENA] ¢þ
>WENV170647727 JREQ01003238 [JREQ] marine sediment metagenome; clay from marine sediments 31 meters below sea floor depth collected from drilling site U1352C 8012 7937 - Cys GCA [ENA] ¢þ
>WENV170647809 JREQ01005705 [JREQ] marine sediment metagenome; clay from marine sediments 31 meters below sea floor depth collected from drilling site U1352C 929 1004 + Cys GCA [ENA] ¢þ
>SRA1002399 SRR001323.53235 Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183) 34 106 + Cys GCA [SRA]
>SRA1002433 SRR001323.132222 Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183) 95 20 - Cys GCA [SRA]
Identical group No.325527 (12 seq.)
>W1710798779 LJTX01000143 Chloroflexota Dehalococcoidia bacterium SG8_51_3 [LJTX] 871 796 - Cys GCA [ENA] ¡û
>WENV180063267 MPLX02343645 [MPLX] marine metagenome; 120 m water sample filtered on 0.2 um supor filter 2574 2499 - Cys GCA [ENA] ¢þ
>WENV180372423 OBOI01072278 [OBOI] sediment metagenome; sediment 347 422 + Cys GCA [ENA] ¢þ
>WENV183811144 PVBE011551634 [PVBE] marine metagenome; water 132 207 + Cys GCA [ENA] ¢þ
>WENV170017306 BART01010872 [BART] marine sediment metagenome; marine subsurface sediment at 5.1 meters below seafloor (mbsf), off the Shimokita Peninsula 511 586 + Cys GCA [ENA] ¢þ
>WENV170018432 BARW01016682 [BARW] marine sediment metagenome; marine subsurface sediment at 107.0 meters below seafloor (mbsf), off the Shimokita Peninsula 329 404 + Cys GCA [ENA] ¢þ
>WENV170214173 CEPX01068920 [CEPX] marine metagenome genome assembly TARA_037_MES_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 180 105 - Cys GCA [ENA] ¢þ
>WENV170395786 CEUC01141146 [CEUC] marine metagenome genome assembly TARA_137_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 130 55 - Cys GCA [ENA] ¢þ
>WENV170610228 FUWD011773784 [FUWD] metagenome; unknown 3 78 + Cys GCA [ENA] ¢þ
>WENV170878536 MDTC01078622 [MDTC] marine metagenome; seawater 8838 8913 + Cys GCA [ENA] ¢þ
>SRA1002430 SRR001323.119511 Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183) 77 2 - Cys GCA [SRA]
>W1610662736 LJTX01000143 Chloroflexota Dehalococcoidia bacterium SG8_51_3 [LJTX] 871 796 - Cys GCA [ENA] ¡û
Identical group No.385136 (1 seq.)
>SRA1002365 SRR001322.80998 Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183) 86 13 - Cys GCA [SRA]
Identical group No.391987 (1 seq.)
>SRA1002442 SRR001323.153954 Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183) 30 105 + Cys GCA [SRA]
Identical group No.419078 (3 seq.)
>WENV183513385 OMKS01004515 [OMKS] sediment metagenome; hot spring sediment 10199 10127 - Cys GCA [ENA] ¢þ
>SRA1002448 SRR001324.8522 Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183) 89 15 - Cys GCA [SRA]
>SRA1049899 SRR035095.156435 454 Sequencing (SRP001816) 491 417 - Cys GCA [SRA]
Identical group No.447960 (1 seq.)
>SRA1002478 SRR001324.64585 Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183) 96 22 - Cys GCA [SRA]
Identical group No.475555 (1 seq.)
>SRA1002401 SRR001323.54290 Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183) 18 92 + Cys GCA [SRA]
Identical group No.475556 (1 seq.)
>SRA1002408 SRR001323.63581 Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183) 16 89 + Cys GCA [SRA]
Identical group No.480817 (10 seq.)
>WENV183514260 OMKS01014498 [OMKS] sediment metagenome; hot spring sediment 3501 3430 - Cys GCA [ENA] ¢þ
>WENV170018029 BARV01006134 [BARV] marine sediment metagenome; marine subsurface sediment at 48.5 meters below seafloor (mbsf), off the Shimokita Peninsula 1439 1366 - Cys GCA [ENA] ¢þ
>WENV170693136 LGOV01097846 [LGOV] marine sediment metagenome; sample #5579, elevator 3A push core 41 containing 12 cm of sediment, collected at Hydrate Ridge 73 2 - Cys GCA [ENA] ¢þ
>WENV170694562 LGVD01097880 [LGVD] marine sediment metagenome; sample #3730, Push core (PC) 16 from cruise R/V Atlantis leg AT-15-68, Alvin dive 4635 at 4 77 + Cys GCA [ENA] ¢þ
>SRA1002459 SRR001324.26909 Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183) 40 110 + Cys GCA [SRA]
>SRA1035964 SRR035089.413519 454 Sequencing (SRP001810) 123 53 - Cys GCA [SRA]
>W1610919992 LSSD01000016 Unclassified Thermoplasmatales archaeon SG8-52-1 [LSSD] 3358 3429 + Cys GCA [ENA] ¡û
>W1610920004 LSSD01000037 Unclassified Thermoplasmatales archaeon SG8-52-1 [LSSD] 264 336 + Cys GCA [ENA] ¡û
>W1610920063 LSSF01000090 Unclassified Thermoplasmatales archaeon SG8-52-4 [LSSF] 7698 7768 + Cys GCA [ENA] ¡û
>W1610920070 LSSG01000024 Unclassified Thermoplasmatales archaeon SG8-52-3 [LSSG] 647 718 + Cys GCA [ENA] ¡û
Select
Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Download Sequence Representative sequence of each cluster
View ClustalW result

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