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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
Anticodon = GCC
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.371917 (1 seq.)
>SRA1002515
SRR001325.74168
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
101
26
-
Gly
GCC
[SRA]
Identical group No.437859 (3 seq.)
>WENV170017187
BART01000647
[BART] marine sediment metagenome; marine subsurface sediment at 5.1 meters below seafloor (mbsf), off the Shimokita Peninsula
1265
1189
-
Gly
GCC
[ENA]
¢þ
>WENV170017300
BART01009870
[BART] marine sediment metagenome; marine subsurface sediment at 5.1 meters below seafloor (mbsf), off the Shimokita Peninsula
515
439
-
Gly
GCC
[ENA]
¢þ
>SRA1002389
SRR001323.36325
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
22
97
+
Gly
GCC
[SRA]
Identical group No.573348 (1 seq.)
>SRA1002479
SRR001324.68553
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
81
6
-
Gly
GCC
[SRA]
Identical group No.771062 (1 seq.)
>SRA1002421
SRR001323.100566
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
26
100
+
Gly
GCC
[SRA]
Identical group No.771063 (1 seq.)
>SRA1002429
SRR001323.118753
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
14
88
+
Gly
GCC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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