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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
Anticodon = GGG
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.155448 (1 seq.)
>SRA1002393
SRR001323.43058
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
113
37
-
Pro
GGG
[SRA]
Identical group No.160865 (6 seq.)
>WENV180098593
MTBK01256408
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
126
49
-
Pro
GGG
[ENA]
¢þ
>WENV170678144
LDZT01011521
[LDZT] terrestrial metagenome; oil reservoir sample SB1
27294
27371
+
Pro
GGG
[ENA]
¢þ
>WENV170679136
LDZU01008553
[LDZU] terrestrial metagenome; oil reservoir sample SB2
1802
1725
-
Pro
GGG
[ENA]
¢þ
>WENV170720592
LSQX01158696
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
1935
1858
-
Pro
GGG
[ENA]
¢þ
>WENV170726512
LSQX01383372
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
15195
15118
-
Pro
GGG
[ENA]
¢þ
>SRA1002381
SRR001323.436
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
10
87
+
Pro
GGG
[SRA]
Identical group No.166741 (1 seq.)
>SRA1002510
SRR001325.65467
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
29
106
+
Pro
GGG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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