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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
Anticodon = GTC
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.158109 (6 seq.)
>W1711584148
MNYD01000158
Chloroflexota
Dehalococcoidia bacterium CG2_30_46_19 [MNYD]
2843
2918
+
Asp
GTC
[ENA]
¡û
>W141066490
ARPL01000047
Chloroflexota
Dehalococcoidia bacterium SCGC AB-539-J10 [ARPL]
3663
3586
-
Asp
GTC
[ENA]
¡û
>WENV170018187
BARV01023473
[BARV] marine sediment metagenome; marine subsurface sediment at 48.5 meters below seafloor (mbsf), off the Shimokita Peninsula
13
88
+
Asp
GTC
[ENA]
¢þ
>WENV170648030
JRER01002881
[JRER] marine sediment metagenome; clay from marine sediments 136 meters below sea floor depth collected from drilling site U1352C
9
84
+
Asp
GTC
[ENA]
¢þ
>WENV170648103
JRER01004787
[JRER] marine sediment metagenome; clay from marine sediments 136 meters below sea floor depth collected from drilling site U1352C
1922
1847
-
Asp
GTC
[ENA]
¢þ
>SRA1002463
SRR001324.38206
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
83
6
-
Asp
GTC
[SRA]
Identical group No.158367 (9 seq.)
>WENV180013062
FMSI01042102
[FMSI] soil metagenome; Soil
78
1
-
Asp
GTC
[ENA]
¢þ
>WENV180036900
FVAA010436108
[FVAA] soil metagenome; Soil
3339
3262
-
Asp
GTC
[ENA]
¢þ
>WENV183513297
OMKS01003901
[OMKS] sediment metagenome; hot spring sediment
2001
2078
+
Asp
GTC
[ENA]
¢þ
>WENV183514270
OMKS01014769
[OMKS] sediment metagenome; hot spring sediment
3288
3365
+
Asp
GTC
[ENA]
¢þ
>WENV170647668
JREQ01001778
[JREQ] marine sediment metagenome; clay from marine sediments 31 meters below sea floor depth collected from drilling site U1352C
493
416
-
Asp
GTC
[ENA]
¢þ
>WENV170647717
JREQ01003052
[JREQ] marine sediment metagenome; clay from marine sediments 31 meters below sea floor depth collected from drilling site U1352C
5193
5116
-
Asp
GTC
[ENA]
¢þ
>WENV170647745
JREQ01003803
[JREQ] marine sediment metagenome; clay from marine sediments 31 meters below sea floor depth collected from drilling site U1352C
1166
1089
-
Asp
GTC
[ENA]
¢þ
>WENV170647811
JREQ01005761
[JREQ] marine sediment metagenome; clay from marine sediments 31 meters below sea floor depth collected from drilling site U1352C
417
340
-
Asp
GTC
[ENA]
¢þ
>SRA1002356
SRR001322.65658
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
21
96
+
Asp
GTC
[SRA]
Identical group No.173243 (1 seq.)
>SRA1002332
SRR001322.9121
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
35
111
+
Asp
GTC
[SRA]
Identical group No.219100 (4 seq.)
>W141289717
JARN01000018
Chloroflexota
Dehalococcoidia bacterium DscP2 [JARN]
7274
7349
+
Asp
GTC
[ENA]
¡û
>WENV170018323
BARW01001184
[BARW] marine sediment metagenome; marine subsurface sediment at 107.0 meters below seafloor (mbsf), off the Shimokita Peninsula
337
411
+
Asp
GTC
[ENA]
¢þ
>WENV170647899
JRER01001073
[JRER] marine sediment metagenome; clay from marine sediments 136 meters below sea floor depth collected from drilling site U1352C
11040
11114
+
Asp
GTC
[ENA]
¢þ
>SRA1002543
SRR001326.31376
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
3
77
+
Asp
GTC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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