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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
Anticodon = GTG
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.480476 (3 seq.)
>WENV170647729
JREQ01003344
[JREQ] marine sediment metagenome; clay from marine sediments 31 meters below sea floor depth collected from drilling site U1352C
3205
3132
-
His
GTG
[ENA]
¢þ
>WENV170647826
JREQ01006605
[JREQ] marine sediment metagenome; clay from marine sediments 31 meters below sea floor depth collected from drilling site U1352C
942
1015
+
His
GTG
[ENA]
¢þ
>SRA1002436
SRR001323.142166
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
39
112
+
His
GTG
[SRA]
Identical group No.480478 (3 seq.)
>WENV170647759
JREQ01004067
[JREQ] marine sediment metagenome; clay from marine sediments 31 meters below sea floor depth collected from drilling site U1352C
6776
6703
-
His
GTG
[ENA]
¢þ
>SRA1002540
SRR001326.20943
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
13
86
+
His
GTG
[SRA]
>W1610629267
LIHJ01000035
Unclassified
Candidatus Bathyarchaeota archaeon BA1 [LIHJ]
2648
2721
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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