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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
Anticodon = TAG
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.100521 (1 seq.)
>SRA1002525
SRR001325.93551
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
117
30
-
Leu
TAG
[SRA]
Identical group No.108908 (1 seq.)
>SRA1002359
SRR001322.70280
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
12
99
+
Leu
TAG
[SRA]
Identical group No.108910 (1 seq.)
>SRA1002380
SRR001322.123220
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
31
120
+
Leu
TAG
[SRA]
Identical group No.136902 (2 seq.)
>SRA1002444
SRR001324.1662
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
1
84
+
Leu
TAG
[SRA]
>SRA1002445
SRR001324.4802
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
1
84
+
Leu
TAG
[SRA]
Identical group No.201070 (1 seq.)
>SRA1002493
SRR001325.6687
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
18
99
+
Leu
TAG
[SRA]
Identical group No.201071 (1 seq.)
>SRA1002502
SRR001325.18591
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
16
99
+
Leu
TAG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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