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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
Anticodon = TCG
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.152003 (1 seq.)
>SRA1002403
SRR001323.58166
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
10
89
+
Arg
TCG
[SRA]
Identical group No.155447 (1 seq.)
>SRA1002385
SRR001323.27551
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
75
-1
-
Arg
TCG
[SRA]
Identical group No.192394 (20 seq.)
>W1711408403
MGMO01000077
Chloroflexota
Chloroflexi bacterium RBG_13_48_17 [MGMO]
10781
10855
+
Arg
TCG
[ENA]
¡û
>W1711408502
MGMS01000025
Chloroflexota
Chloroflexi bacterium RBG_13_51_36 [MGMS]
5343
5417
+
Arg
TCG
[ENA]
¡û
>W1711584176
MNYE01000120
Chloroflexota
Dehalococcoidia bacterium CG2_30_46_9 [MNYE]
1438
1514
+
Arg
TCG
[ENA]
¡û
>WENV180013197
FMSI01054887
[FMSI] soil metagenome; Soil
5007
4931
-
Arg
TCG
[ENA]
¢þ
>WENV180013572
FMSI01104956
[FMSI] soil metagenome; Soil
7182
7108
-
Arg
TCG
[ENA]
¢þ
>WENV180036575
FVAA010182842
[FVAA] soil metagenome; Soil
1
77
+
Arg
TCG
[ENA]
¢þ
>WENV181409401
OGCI01000157
[OGCI] hot springs metagenome; Hot spring water
44248
44324
+
Arg
TCG
[ENA]
¢þ
>WENV181415479
OGCL01011871
[OGCL] hot springs metagenome; Hot spring water
2409
2333
-
Arg
TCG
[ENA]
¢þ
>WENV183514002
OMKS01010357
[OMKS] sediment metagenome; hot spring sediment
3920
3994
+
Arg
TCG
[ENA]
¢þ
>WENV183702101
PDVH01014098
[PDVH] alkali sediment metagenome; glacial lake sediment
385
461
+
Arg
TCG
[ENA]
¢þ
>WENV183703178
PDVJ01004453
[PDVJ] alkali sediment metagenome; glacial lake sediment
3869
3943
+
Arg
TCG
[ENA]
¢þ
>WENV183703776
PDVJ01044825
[PDVJ] alkali sediment metagenome; glacial lake sediment
617
691
+
Arg
TCG
[ENA]
¢þ
>WENV170018030
BARV01006146
[BARV] marine sediment metagenome; marine subsurface sediment at 48.5 meters below seafloor (mbsf), off the Shimokita Peninsula
451
527
+
Arg
TCG
[ENA]
¢þ
>WENV170647723
JREQ01003175
[JREQ] marine sediment metagenome; clay from marine sediments 31 meters below sea floor depth collected from drilling site U1352C
2732
2808
+
Arg
TCG
[ENA]
¢þ
>WENV170647885
JRER01000887
[JRER] marine sediment metagenome; clay from marine sediments 136 meters below sea floor depth collected from drilling site U1352C
2
78
+
Arg
TCG
[ENA]
¢þ
>WENV170647962
JRER01001678
[JRER] marine sediment metagenome; clay from marine sediments 136 meters below sea floor depth collected from drilling site U1352C
648
724
+
Arg
TCG
[ENA]
¢þ
>WENV170647963
JRER01001678
[JRER] marine sediment metagenome; clay from marine sediments 136 meters below sea floor depth collected from drilling site U1352C
8515
8589
+
Arg
TCG
[ENA]
¢þ
>W1910725740
MGOF01000009
Chloroflexota
Chloroflexi bacterium RBG_19FT_COMBO_47_15 [MGOF]
1291
1365
+
Arg
TCG
[ENA]
¡û
>W1910725743
MGOF01000018
Chloroflexota
Chloroflexi bacterium RBG_19FT_COMBO_47_15 [MGOF]
9085
9009
-
Arg
TCG
[ENA]
¡û
>SRA1002511
SRR001325.67424
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
34
110
+
Arg
TCG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK