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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
Anticodon = TCT
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.171582 (2 seq.)
>WENV170647906
JRER01001242
[JRER] marine sediment metagenome; clay from marine sediments 136 meters below sea floor depth collected from drilling site U1352C
7778
7855
+
Arg
TCT
[ENA]
¢þ
>SRA1002413
SRR001323.81661
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
85
8
-
Arg
TCT
[SRA]
Identical group No.177655 (16 seq.)
>W1711408648
MGNA01000022
Chloroflexota
Chloroflexi bacterium RBG_13_56_8b [MGNA]
12115
12191
+
Arg
TCT
[ENA]
¡û
>WENV180036541
FVAA010161202
[FVAA] soil metagenome; Soil
1059
983
-
Arg
TCT
[ENA]
¢þ
>W141066471
ARPL01000001
Chloroflexota
Dehalococcoidia bacterium SCGC AB-539-J10 [ARPL]
12488
12564
+
Arg
TCT
[ENA]
¡û
>WENV181409201
OGCI01000030
[OGCI] hot springs metagenome; Hot spring water
64038
63962
-
Arg
TCT
[ENA]
¢þ
>WENV181410244
OGCI01001930
[OGCI] hot springs metagenome; Hot spring water
15337
15413
+
Arg
TCT
[ENA]
¢þ
>WENV183513851
OMKS01008530
[OMKS] sediment metagenome; hot spring sediment
4741
4817
+
Arg
TCT
[ENA]
¢þ
>WENV170016827
BARS01015677
[BARS] marine sediment metagenome; marine subsurface sediment at 0.8 meters below seafloor (mbsf), off the Shimokita Peninsula
218
142
-
Arg
TCT
[ENA]
¢þ
>WENV170018077
BARV01009953
[BARV] marine sediment metagenome; marine subsurface sediment at 48.5 meters below seafloor (mbsf), off the Shimokita Peninsula
164
240
+
Arg
TCT
[ENA]
¢þ
>WENV170224427
CEQE01053105
[CEQE] marine metagenome genome assembly TARA_037_MES_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
129
205
+
Arg
TCT
[ENA]
¢þ
>WENV170398494
CEUD01231106
[CEUD] marine metagenome genome assembly TARA_137_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
669
593
-
Arg
TCT
[ENA]
¢þ
>WENV170647789
JREQ01004656
[JREQ] marine sediment metagenome; clay from marine sediments 31 meters below sea floor depth collected from drilling site U1352C
18010
17936
-
Arg
TCT
[ENA]
¢þ
>WENV170648066
JRER01003755
[JRER] marine sediment metagenome; clay from marine sediments 136 meters below sea floor depth collected from drilling site U1352C
11338
11263
-
Arg
TCT
[ENA]
¢þ
>SRA1002358
SRR001322.66506
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
91
15
-
Arg
TCT
[SRA]
>SRA1002425
SRR001323.105672
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
20
96
+
Arg
TCT
[SRA]
>SRA1018584
SRR035082.314821
454 Sequencing (SRP001803)
402
326
-
Arg
TCT
[SRA]
>SRA1034943
SRR035089.204302
454 Sequencing (SRP001810)
202
276
+
Arg
TCT
[SRA]
Identical group No.242925 (1 seq.)
>SRA1002466
SRR001324.41723
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
36
109
+
Arg
TCT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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