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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Microbial community gene content and expression in the Central North Pacific Gyre, Station ALOHA, HOT186 (SRP001041)
Anticodon = AGT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.453188 (12 seq.)
>WENV180046364
MPLT02089098
[MPLT] marine metagenome; 70 m water sample filtered on 0.2 um supor filter
188
260
+
Thr
AGT
[ENA]
¢þ
>WENV181305438
OFIG01009002
[OFIG] marine metagenome; seawater
389
463
+
Thr
AGT
[ENA]
¢þ
>WENV181308802
OFIT01018117
[OFIT] marine metagenome; seawater
483
408
-
Thr
AGT
[ENA]
¢þ
>WENV181314540
OFJK01009618
[OFJK] marine metagenome; seawater
480
408
-
Thr
AGT
[ENA]
¢þ
>WENV181315354
OFJO01006504
[OFJO] marine metagenome; seawater
225
299
+
Thr
AGT
[ENA]
¢þ
>WENV181320317
OFKG01011167
[OFKG] marine metagenome; seawater
102
176
+
Thr
AGT
[ENA]
¢þ
>WENV181403196
OFUA01003332
[OFUA] marine metagenome; seawater
678
604
-
Thr
AGT
[ENA]
¢þ
>WENV170184901
CEOZ01156279
[CEOZ] marine metagenome genome assembly TARA_064_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
328
256
-
Thr
AGT
[ENA]
¢þ
>WENV170493778
CEVR01028824
[CEVR] marine metagenome genome assembly TARA_148_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
191
266
+
Thr
AGT
[ENA]
¢þ
>WENV170763008
LWDU01000868
[LWDU] hydrothermal vent metagenome; deep sea hydrothermal plume seawater
3842
3916
+
Thr
AGT
[ENA]
¢þ
>SRA1007910
SRR020490.117344
Microbial community gene content and expression in the Central North Pacific Gyre, Station ALOHA, HOT186 (SRP001041)
147
75
-
Thr
AGT
[SRA]
>SRA1010238
SRR020491.499490
Microbial community gene content and expression in the Central North Pacific Gyre, Station ALOHA, HOT186 (SRP001041)
120
45
-
Thr
AGT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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