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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Mimiviridae
Anticodon = CAA
HIT:
8 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.157063 (10 seq.)
>VRL0100079
AY653733
Mimiviridae
Acanthamoeba polyphaga mimivirus
1139168
1139250
+
Leu
CAA
[ENA]
¡û
>VRL181000040
HQ336222
Mimiviridae
Acanthamoeba polyphaga mimivirus (HQ336222)
1139240
1139322
+
Leu
CAA
[ENA]
¡û
>VRL181000408
KF493731
Mimiviridae
Hirudovirus strain Sangsue (KF493731)
41444
41362
-
Leu
CAA
[ENA]
¡û
>VRL181000413
KF527228
Mimiviridae
Mimivirus terra2 (KF527228)
993692
993610
-
Leu
CAA
[ENA]
¡û
>VRL181000421
KF959826
Mimiviridae
Samba virus (KF959826)
1139244
1139326
+
Leu
CAA
[ENA]
¡û
>VRL181000467
KM982403
Mimiviridae
Acanthamoeba polyphaga mimivirus Amazonia (KM982403)
1111310
1111392
+
Leu
CAA
[ENA]
¡û
>VRL181000501
AP017644
Mimiviridae
Acanthamoeba castellanii mimivirus Mimivirus kasaii (AP017644)
1141259
1141341
+
Leu
CAA
[ENA]
¡û
>VRL181000507
AP017645
Mimiviridae
Acanthamoeba castellanii mimivirus Mimivirus shirakomae (AP017645)
1141307
1141389
+
Leu
CAA
[ENA]
¡û
>VRL181000513
KT599914
Mimiviridae
Niemeyer virus (KT599914)
1257782
1257864
+
Leu
CAA
[ENA]
¡û
>VRL181000529
KU761889
Mimiviridae
Mimivirus Bombay (KU761889)
1138588
1138670
+
Leu
CAA
[ENA]
¡û
Identical group No.157066 (3 seq.)
>VRL181000075
JN258408
Mimiviridae
Megavirus chiliensis (JN258408)
17045
16963
-
Leu
CAA
[ENA]
¡û
>VRL181000535
KU877344
Mimiviridae
Powai lake megavirus (KU877344)
23219
23137
-
Leu
CAA
[ENA]
¡û
>VRL181000735
MG602508
Mimiviridae
Acanthamoeba polyphaga mimivirus (MG602508)
10405
10323
-
Leu
CAA
[ENA]
¡û
Identical group No.160098 (8 seq.)
>VRL181000080
JN885990
Mimiviridae
Megavirus courdo7 (JN885990)
333
251
-
Leu
CAA
[ENA]
¡û
>VRL181000081
JN885993
Mimiviridae
Megavirus courdo7 (JN885993)
51917
51999
+
Leu
CAA
[ENA]
¡û
>VRL181000089
JX885207
Mimiviridae
Megavirus lba (JX885207)
1216109
1216191
+
Leu
CAA
[ENA]
¡û
>VRL181000096
JX975216
Mimiviridae
Megavirus courdo11 (JX975216)
1227985
1228067
+
Leu
CAA
[ENA]
¡û
>VRL181000099
JX975216
Mimiviridae
Megavirus courdo11 (JX975216)
337
255
-
Leu
CAA
[ENA]
¡û
>VRL181000417
KF527229
Mimiviridae
Megavirus terra1 (KF527229)
952470
952388
-
Leu
CAA
[ENA]
¡û
>VRL181000730
MG602507
Mimiviridae
Acanthamoeba polyphaga mimivirus (MG602507)
1234354
1234436
+
Leu
CAA
[ENA]
¡û
>VRL181000745
MG807319
Mimiviridae
Megavirus vitis (MG807319)
20455
20373
-
Leu
CAA
[ENA]
¡û
Identical group No.162458 (2 seq.)
>VRL181000060
JF801956
Mimiviridae
Acanthamoeba castellanii mamavirus Hal-V (JF801956)
1150469
1150551
+
Leu
CAA
[ENA]
¡û
>VRL181000457
KM982401
Mimiviridae
Acanthamoeba polyphaga mimivirus Oyster (KM982401)
1122275
1122357
+
Leu
CAA
[ENA]
¡û
Identical group No.162459 (1 seq.)
>VRL181000461
KM982402
Mimiviridae
Acanthamoeba polyphaga mimivirus Kroon (KM982402)
1141337
1141419
+
Leu
CAA
[ENA]
¡û
Identical group No.171598 (2 seq.)
>VRL181000748
MG807320
Mimiviridae
Moumouvirus australiensis (MG807320)
6895
6977
+
Leu
CAA
[ENA]
¡û
>VRL181000755
MG807320
Mimiviridae
Moumouvirus australiensis (MG807320)
20231
20149
-
Leu
CAA
[ENA]
¡û
Identical group No.171599 (2 seq.)
>VRL181000751
MG807320
Mimiviridae
Moumouvirus australiensis (MG807320)
1086240
1086322
+
Leu
CAA
[ENA]
¡û
>VRL181000753
MG807320
Mimiviridae
Moumouvirus australiensis (MG807320)
32007
31925
-
Leu
CAA
[ENA]
¡û
Identical group No.172856 (1 seq.)
>VRL181000380
KC008572
Mimiviridae
Moumouvirus goulette (KC008572)
1016543
1016625
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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