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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Mimiviridae
Anticodon = CAA
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.102476 (13 seq.)
>VRL181000075
JN258408
Mimiviridae
Megavirus chiliensis (JN258408)
17045
16963
-
Leu
CAA
[ENA]
¡û
>VRL181000080
JN885990
Mimiviridae
Megavirus courdo7 (JN885990)
333
251
-
Leu
CAA
[ENA]
¡û
>VRL181000081
JN885993
Mimiviridae
Megavirus courdo7 (JN885993)
51917
51999
+
Leu
CAA
[ENA]
¡û
>VRL181000089
JX885207
Mimiviridae
Megavirus lba (JX885207)
1216109
1216191
+
Leu
CAA
[ENA]
¡û
>VRL181000096
JX975216
Mimiviridae
Megavirus courdo11 (JX975216)
1227985
1228067
+
Leu
CAA
[ENA]
¡û
>VRL181000099
JX975216
Mimiviridae
Megavirus courdo11 (JX975216)
337
255
-
Leu
CAA
[ENA]
¡û
>VRL181000417
KF527229
Mimiviridae
Megavirus terra1 (KF527229)
952470
952388
-
Leu
CAA
[ENA]
¡û
>VRL181000535
KU877344
Mimiviridae
Powai lake megavirus (KU877344)
23219
23137
-
Leu
CAA
[ENA]
¡û
>VRL181000730
MG602507
Mimiviridae
Acanthamoeba polyphaga mimivirus (MG602507)
1234354
1234436
+
Leu
CAA
[ENA]
¡û
>VRL181000735
MG602508
Mimiviridae
Acanthamoeba polyphaga mimivirus (MG602508)
10405
10323
-
Leu
CAA
[ENA]
¡û
>VRL181000745
MG807319
Mimiviridae
Megavirus vitis (MG807319)
20455
20373
-
Leu
CAA
[ENA]
¡û
>VRL181000748
MG807320
Mimiviridae
Moumouvirus australiensis (MG807320)
6895
6977
+
Leu
CAA
[ENA]
¡û
>VRL181000755
MG807320
Mimiviridae
Moumouvirus australiensis (MG807320)
20231
20149
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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