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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Mimiviridae
Anticodon = CCA
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.485757 (10 seq.)
>VRL181000074
JN258408
Mimiviridae
Megavirus chiliensis (JN258408)
62833
62763
-
Trp
CCA
[ENA]
¡û
>VRL181000079
JN885990
Mimiviridae
Megavirus courdo7 (JN885990)
39397
39327
-
Trp
CCA
[ENA]
¡û
>VRL181000091
JX885207
Mimiviridae
Megavirus lba (JX885207)
32055
31985
-
Trp
CCA
[ENA]
¡û
>VRL181000098
JX975216
Mimiviridae
Megavirus courdo11 (JX975216)
49632
49562
-
Trp
CCA
[ENA]
¡û
>VRL181000416
KF527229
Mimiviridae
Megavirus terra1 (KF527229)
995761
995691
-
Trp
CCA
[ENA]
¡û
>VRL181000534
KU877344
Mimiviridae
Powai lake megavirus (KU877344)
56804
56734
-
Trp
CCA
[ENA]
¡û
>VRL181000732
MG602507
Mimiviridae
Acanthamoeba polyphaga mimivirus (MG602507)
50042
49972
-
Trp
CCA
[ENA]
¡û
>VRL181000734
MG602508
Mimiviridae
Acanthamoeba polyphaga mimivirus (MG602508)
56193
56123
-
Trp
CCA
[ENA]
¡û
>VRL181000738
MG779299
Mimiviridae
Bandra megavirus (MG779299)
4625
4555
-
Trp
CCA
[ENA]
¡û
>VRL181000744
MG807319
Mimiviridae
Megavirus vitis (MG807319)
62628
62558
-
Trp
CCA
[ENA]
¡û
Identical group No.490200 (11 seq.)
>VRL0100078
AY653733
Mimiviridae
Acanthamoeba polyphaga mimivirus
1129227
1129297
+
Trp
CCA
[ENA]
¡û
>VRL181000005
FM992106
Mimiviridae
Acanthamoeba polyphaga mimivirus (FM992106)
35
105
+
Trp
CCA
[ENA]
¡û
>VRL181000039
HQ336222
Mimiviridae
Acanthamoeba polyphaga mimivirus (HQ336222)
1129299
1129369
+
Trp
CCA
[ENA]
¡û
>VRL181000059
JF801956
Mimiviridae
Acanthamoeba castellanii mamavirus Hal-V (JF801956)
1140563
1140633
+
Trp
CCA
[ENA]
¡û
>VRL181000407
KF493731
Mimiviridae
Hirudovirus strain Sangsue (KF493731)
51383
51313
-
Trp
CCA
[ENA]
¡û
>VRL181000412
KF527228
Mimiviridae
Mimivirus terra2 (KF527228)
1003567
1003497
-
Trp
CCA
[ENA]
¡û
>VRL181000420
KF959826
Mimiviridae
Samba virus (KF959826)
1129303
1129373
+
Trp
CCA
[ENA]
¡û
>VRL181000466
KM982403
Mimiviridae
Acanthamoeba polyphaga mimivirus Amazonia (KM982403)
1101369
1101439
+
Trp
CCA
[ENA]
¡û
>VRL181000500
AP017644
Mimiviridae
Acanthamoeba castellanii mimivirus Mimivirus kasaii (AP017644)
1131318
1131388
+
Trp
CCA
[ENA]
¡û
>VRL181000506
AP017645
Mimiviridae
Acanthamoeba castellanii mimivirus Mimivirus shirakomae (AP017645)
1131366
1131436
+
Trp
CCA
[ENA]
¡û
>VRL181000528
KU761889
Mimiviridae
Mimivirus Bombay (KU761889)
1128647
1128717
+
Trp
CCA
[ENA]
¡û
Identical group No.507930 (1 seq.)
>VRL182000019
KM982401
Mimiviridae
Acanthamoeba polyphaga mimivirus Oyster (KM982401)
1112360
1112430
+
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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