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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Mimiviridae
Anticodon = TAA
HIT:
9 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.102473 (24 seq.)
>VRL0100079
AY653733
Mimiviridae
Acanthamoeba polyphaga mimivirus
1139168
1139250
+
Leu
CAA
[ENA]
¡û
>VRL0100081
AY653733
Mimiviridae
Acanthamoeba polyphaga mimivirus
57317
57235
-
Leu
TAA
[ENA]
¡û
>VRL181000040
HQ336222
Mimiviridae
Acanthamoeba polyphaga mimivirus (HQ336222)
1139240
1139322
+
Leu
CAA
[ENA]
¡û
>VRL181000042
HQ336222
Mimiviridae
Acanthamoeba polyphaga mimivirus (HQ336222)
57316
57234
-
Leu
TAA
[ENA]
¡û
>VRL181000060
JF801956
Mimiviridae
Acanthamoeba castellanii mamavirus Hal-V (JF801956)
1150469
1150551
+
Leu
CAA
[ENA]
¡û
>VRL181000062
JF801956
Mimiviridae
Acanthamoeba castellanii mamavirus Hal-V (JF801956)
69094
69012
-
Leu
TAA
[ENA]
¡û
>VRL181000065
JN036606
Mimiviridae
Acanthamoeba polyphaga mimivirus (JN036606)
57234
57152
-
Leu
TAA
[ENA]
¡û
>VRL181000404
KF493731
Mimiviridae
Hirudovirus strain Sangsue (KF493731)
1121179
1121261
+
Leu
TAA
[ENA]
¡û
>VRL181000408
KF493731
Mimiviridae
Hirudovirus strain Sangsue (KF493731)
41444
41362
-
Leu
CAA
[ENA]
¡û
>VRL181000413
KF527228
Mimiviridae
Mimivirus terra2 (KF527228)
993692
993610
-
Leu
CAA
[ENA]
¡û
>VRL181000415
KF527228
Mimiviridae
Mimivirus terra2 (KF527228)
768652
768570
-
Leu
TAA
[ENA]
¡û
>VRL181000421
KF959826
Mimiviridae
Samba virus (KF959826)
1139244
1139326
+
Leu
CAA
[ENA]
¡û
>VRL181000423
KF959826
Mimiviridae
Samba virus (KF959826)
57316
57234
-
Leu
TAA
[ENA]
¡û
>VRL181000457
KM982401
Mimiviridae
Acanthamoeba polyphaga mimivirus Oyster (KM982401)
1122275
1122357
+
Leu
CAA
[ENA]
¡û
>VRL181000459
KM982401
Mimiviridae
Acanthamoeba polyphaga mimivirus Oyster (KM982401)
38946
38864
-
Leu
TAA
[ENA]
¡û
>VRL181000467
KM982403
Mimiviridae
Acanthamoeba polyphaga mimivirus Amazonia (KM982403)
1111310
1111392
+
Leu
CAA
[ENA]
¡û
>VRL181000469
KM982403
Mimiviridae
Acanthamoeba polyphaga mimivirus Amazonia (KM982403)
29772
29690
-
Leu
TAA
[ENA]
¡û
>VRL181000501
AP017644
Mimiviridae
Acanthamoeba castellanii mimivirus Mimivirus kasaii (AP017644)
1141259
1141341
+
Leu
CAA
[ENA]
¡û
>VRL181000503
AP017644
Mimiviridae
Acanthamoeba castellanii mimivirus Mimivirus kasaii (AP017644)
60702
60620
-
Leu
TAA
[ENA]
¡û
>VRL181000507
AP017645
Mimiviridae
Acanthamoeba castellanii mimivirus Mimivirus shirakomae (AP017645)
1141307
1141389
+
Leu
CAA
[ENA]
¡û
>VRL181000509
AP017645
Mimiviridae
Acanthamoeba castellanii mimivirus Mimivirus shirakomae (AP017645)
60552
60470
-
Leu
TAA
[ENA]
¡û
>VRL181000513
KT599914
Mimiviridae
Niemeyer virus (KT599914)
1257782
1257864
+
Leu
CAA
[ENA]
¡û
>VRL181000529
KU761889
Mimiviridae
Mimivirus Bombay (KU761889)
1138588
1138670
+
Leu
CAA
[ENA]
¡û
>VRL181000531
KU761889
Mimiviridae
Mimivirus Bombay (KU761889)
60771
60689
-
Leu
TAA
[ENA]
¡û
Identical group No.102474 (14 seq.)
>VRL0100080
AY653733
Mimiviridae
Acanthamoeba polyphaga mimivirus
1167703
1167785
+
Leu
TAA
[ENA]
¡û
>VRL181000004
FM992105
Mimiviridae
Acanthamoeba polyphaga mimivirus (FM992105)
395
477
+
Leu
TAA
[ENA]
¡û
>VRL181000041
HQ336222
Mimiviridae
Acanthamoeba polyphaga mimivirus (HQ336222)
1167848
1167930
+
Leu
TAA
[ENA]
¡û
>VRL181000061
JF801956
Mimiviridae
Acanthamoeba castellanii mamavirus Hal-V (JF801956)
1178824
1178906
+
Leu
TAA
[ENA]
¡û
>VRL181000409
KF493731
Mimiviridae
Hirudovirus strain Sangsue (KF493731)
12844
12762
-
Leu
TAA
[ENA]
¡û
>VRL181000414
KF527228
Mimiviridae
Mimivirus terra2 (KF527228)
960210
960128
-
Leu
TAA
[ENA]
¡û
>VRL181000422
KF959826
Mimiviridae
Samba virus (KF959826)
1167852
1167934
+
Leu
TAA
[ENA]
¡û
>VRL181000458
KM982401
Mimiviridae
Acanthamoeba polyphaga mimivirus Oyster (KM982401)
1147933
1148015
+
Leu
TAA
[ENA]
¡û
>VRL181000462
KM982402
Mimiviridae
Acanthamoeba polyphaga mimivirus Kroon (KM982402)
1178026
1178108
+
Leu
TAA
[ENA]
¡û
>VRL181000468
KM982403
Mimiviridae
Acanthamoeba polyphaga mimivirus Amazonia (KM982403)
1139918
1140000
+
Leu
TAA
[ENA]
¡û
>VRL181000502
AP017644
Mimiviridae
Acanthamoeba castellanii mimivirus Mimivirus kasaii (AP017644)
1169867
1169949
+
Leu
TAA
[ENA]
¡û
>VRL181000508
AP017645
Mimiviridae
Acanthamoeba castellanii mimivirus Mimivirus shirakomae (AP017645)
1169915
1169997
+
Leu
TAA
[ENA]
¡û
>VRL181000514
KT599914
Mimiviridae
Niemeyer virus (KT599914)
1286390
1286472
+
Leu
TAA
[ENA]
¡û
>VRL181000530
KU761889
Mimiviridae
Mimivirus Bombay (KU761889)
1167196
1167278
+
Leu
TAA
[ENA]
¡û
Identical group No.102477 (9 seq.)
>W141241661
CAHL01000073
Bacillota
Ruminococcus sp. JC304 [CAHL]
257
339
+
Leu
TAA
[ENA]
¡û
>VRL181000076
JN258408
Mimiviridae
Megavirus chiliensis (JN258408)
15909
15827
-
Leu
TAA
[ENA]
¡û
>VRL181000082
JN885993
Mimiviridae
Megavirus courdo7 (JN885993)
55383
55465
+
Leu
TAA
[ENA]
¡û
>VRL181000383
KC008572
Mimiviridae
Moumouvirus goulette (KC008572)
11611
11529
-
Leu
TAA
[ENA]
¡û
>VRL181000536
KU877344
Mimiviridae
Powai lake megavirus (KU877344)
19888
19806
-
Leu
TAA
[ENA]
¡û
>VRL181000731
MG602507
Mimiviridae
Acanthamoeba polyphaga mimivirus (MG602507)
1235969
1236051
+
Leu
TAA
[ENA]
¡û
>VRL181000736
MG602508
Mimiviridae
Acanthamoeba polyphaga mimivirus (MG602508)
9269
9187
-
Leu
TAA
[ENA]
¡û
>VRL181000737
MG779297
Mimiviridae
Bandra megavirus (MG779297)
1308
1226
-
Leu
TAA
[ENA]
¡û
>VRL181000746
MG807319
Mimiviridae
Megavirus vitis (MG807319)
16632
16550
-
Leu
TAA
[ENA]
¡û
Identical group No.106328 (2 seq.)
>VRL181000461
KM982402
Mimiviridae
Acanthamoeba polyphaga mimivirus Kroon (KM982402)
1141337
1141419
+
Leu
CAA
[ENA]
¡û
>VRL181000463
KM982402
Mimiviridae
Acanthamoeba polyphaga mimivirus Kroon (KM982402)
50206
50124
-
Leu
TAA
[ENA]
¡û
Identical group No.109661 (2 seq.)
>VRL181000733
MG602507
Mimiviridae
Acanthamoeba polyphaga mimivirus (MG602507)
4842
4760
-
Leu
TAA
[ENA]
¡û
>VRL181000741
MG779396
Mimiviridae
Bandra megavirus (MG779396)
1322
1404
+
Leu
TAA
[ENA]
¡û
Identical group No.112288 (7 seq.)
>VRL181000083
JN885994
dsDNAviruses,noRNAstage
Moumouvirus Monve (JN885994)
8985
8903
-
Leu
TAA
[ENA]
¡û
>VRL181000380
KC008572
Mimiviridae
Moumouvirus goulette (KC008572)
1016543
1016625
+
Leu
CAA
[ENA]
¡û
>VRL181000747
MG807320
Mimiviridae
Moumouvirus australiensis (MG807320)
5201
5283
+
Leu
TAA
[ENA]
¡û
>VRL181000751
MG807320
Mimiviridae
Moumouvirus australiensis (MG807320)
1086240
1086322
+
Leu
CAA
[ENA]
¡û
>VRL181000752
MG807320
Mimiviridae
Moumouvirus australiensis (MG807320)
1096322
1096404
+
Leu
TAA
[ENA]
¡û
>VRL181000753
MG807320
Mimiviridae
Moumouvirus australiensis (MG807320)
32007
31925
-
Leu
CAA
[ENA]
¡û
>VRL181000754
MG807320
Mimiviridae
Moumouvirus australiensis (MG807320)
21925
21843
-
Leu
TAA
[ENA]
¡û
Identical group No.113088 (3 seq.)
>VRL181000090
JX885207
Mimiviridae
Megavirus lba (JX885207)
1217724
1217806
+
Leu
TAA
[ENA]
¡û
>VRL181000097
JX975216
Mimiviridae
Megavirus courdo11 (JX975216)
1231450
1231532
+
Leu
TAA
[ENA]
¡û
>VRL181000384
KC008572
Mimiviridae
Moumouvirus goulette (KC008572)
439
357
-
Leu
TAA
[ENA]
¡û
Identical group No.124504 (4 seq.)
>VRL181000013
GU244497
Mimiviridae
Cafeteria roenbergensis virus BV-PW1 (GU244497)
509181
509265
+
Leu
TAA
[ENA]
¡û
>VRL181000016
GU244497
Mimiviridae
Cafeteria roenbergensis virus BV-PW1 (GU244497)
509911
509993
+
Leu
TAA
[ENA]
¡û
>VRL181000017
GU244497
Mimiviridae
Cafeteria roenbergensis virus BV-PW1 (GU244497)
510177
510261
+
Leu
TAA
[ENA]
¡û
>VRL181000021
GU244497
Mimiviridae
Cafeteria roenbergensis virus BV-PW1 (GU244497)
511091
511175
+
Leu
TAA
[ENA]
¡û
Identical group No.124505 (5 seq.)
>VRL181000014
GU244497
Mimiviridae
Cafeteria roenbergensis virus BV-PW1 (GU244497)
509421
509504
+
Leu
TAA
[ENA]
¡û
>VRL181000018
GU244497
Mimiviridae
Cafeteria roenbergensis virus BV-PW1 (GU244497)
510417
510501
+
Leu
TAA
[ENA]
¡û
>VRL181000019
GU244497
Mimiviridae
Cafeteria roenbergensis virus BV-PW1 (GU244497)
510656
510739
+
Leu
TAA
[ENA]
¡û
>VRL181000022
GU244497
Mimiviridae
Cafeteria roenbergensis virus BV-PW1 (GU244497)
511330
511414
+
Leu
TAA
[ENA]
¡û
>VRL181000023
GU244497
Mimiviridae
Cafeteria roenbergensis virus BV-PW1 (GU244497)
511570
511653
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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