This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Mine drainage metagenome Contig1
Anticodon = CAC
HIT:
11 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.274596 (3 seq.)
>ENV09001995
ACXJ01005245
Mine drainage metagenome Contig1
990
916
-
Val
CAC
[ENA]
¡û
>W1610046381
BBCH01000120
Actinomycetota
Aciditerrimonas ferrireducens JCM 15389 [BBCH]
1874
1800
-
Val
CAC
[ENA]
¡û
>W1710043177
BBCH01000120
Actinomycetota
Aciditerrimonas ferrireducens JCM 15389 [BBCH]
1874
1800
-
Val
CAC
[ENA]
¡û
Identical group No.306462 (1 seq.)
>ENV09002054
ACXJ01008229
Mine drainage metagenome Contig1
1461
1385
-
Val
CAC
[ENA]
¡û
Identical group No.306473 (1 seq.)
>ENV09002105
ACXJ01009715
Mine drainage metagenome Contig1
1200
1276
+
Val
CAC
[ENA]
¡û
Identical group No.306480 (6 seq.)
>WENV180695147
OCZS013099118
[OCZS] soil metagenome; soil
53
127
+
Val
CAC
[ENA]
¢þ
>WENV181296326
OFHJ01025965
[OFHJ] soil metagenome; Clay
165
239
+
Val
CAC
[ENA]
¢þ
>WENV181407271
OGCG01013908
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
350
424
+
Val
CAC
[ENA]
¢þ
>W141816884
JQKF01000015
Actinomycetota
Ferrimicrobium acidiphilum DSM 19497 [JQKF]
53552
53476
-
Val
CAC
[ENA]
¡û
>ENV09002164
ACXJ01010640
Mine drainage metagenome Contig1
304
380
+
Val
CAC
[ENA]
¡û
>W1511512949
JXUW01000011
Actinomycetota
Ferrimicrobium acidiphilum DSM 19497 T23 [JXUW]
53472
53396
-
Val
CAC
[ENA]
¡û
Identical group No.488115 (5 seq.)
>A171007757
LT671858
Unclassified
Cuniculiplasma divulgatum S5(T) [LT671858]
651208
651134
-
Val
CAC
-
¡û
>A171007794
LT719092
Unclassified
Cuniculiplasma divulgatum PM4 [LT719092]
649817
649744
-
Val
CAC
-
¡û
>W141000144
AADL01002062
Unclassified
mine drainage metagenome Group III [AADL]
2013
2085
+
Val
CAC
[ENA]
¡û
>ENV09002237
ACXJ01011395
Mine drainage metagenome Contig1
11691
11619
-
Val
CAC
[ENA]
¡û
>WENV077152
AADL01002062
Acid Mine Drainage microbial communities from Richmond mine
2013
2088
+
Val
CAC
[ENA]
Identical group No.490124 (4 seq.)
>ENV09002078
ACXJ01009006
Mine drainage metagenome Contig1
1716
1788
+
Val
CAC
[ENA]
¡û
>ENV09002109
ACXJ01009841
Mine drainage metagenome Contig1
3049
3122
+
Val
CAC
[ENA]
¡û
>ENV09002262
ACXJ01012402
Mine drainage metagenome Contig1
245
317
+
Val
CAC
[ENA]
¡û
>ENV09002279
ACXK01000045
Thermoplasmatales archaeon A-plasma AplasmaContig10144
13204
13277
+
Val
CAC
[ENA]
¡û
Identical group No.490128 (1 seq.)
>ENV09002104
ACXJ01009706
Mine drainage metagenome Contig1
724
652
-
Val
CAC
[ENA]
¡û
Identical group No.490140 (2 seq.)
>WENV170013701
AUZY01011722
[AUZY] mine drainage metagenome; lowermost (B1B) sediment-attached strata from acid streamer/mats thriving at Los Rueldos
378
454
+
Val
CAC
[ENA]
¢þ
>ENV09002144
ACXJ01010413
Mine drainage metagenome Contig1
1887
1811
-
Val
CAC
[ENA]
¡û
Identical group No.674639 (9 seq.)
>W141000002
AADL01000192
Unclassified
mine drainage metagenome Group III [AADL]
838
764
-
Val
CAC
[ENA]
¡û
>W141085056
AURA01000151
Nitrospirota
Leptospirillum sp. Group IV 'UBA BS' [AURA]
2973
3047
+
Val
CAC
[ENA]
¡û
>WENV170013413
AUZX01003338
[AUZX] mine drainage metagenome; uppermost (B1A) sediment-attached strata from acid streamer/mats thriving at Los Rueldos
102
176
+
Val
CAC
[ENA]
¢þ
>W09132215
ACNP01000061
Unclassified
mine drainage metagenome ferrodiazotrophum [ACNP]
11829
11903
+
Val
CAC
[ENA]
¡û
>W09132216
ACNP01000062
Unclassified
mine drainage metagenome ferrodiazotrophum [ACNP]
490
564
+
Val
CAC
[ENA]
¡û
>ENV09002079
ACXJ01009012
Mine drainage metagenome Contig1
2972
3046
+
Val
CAC
[ENA]
¡û
>C121001317
AP012342
Nitrospirota
Leptospirillum ferrooxidans C2-3 [AP012342]
2450112
2450038
-
Val
CAC
[Ensembl]
¡û
>C131001621
CP002919
Nitrospirota
Leptospirillum ferriphilum ML-04 [CP002919]
2344587
2344513
-
Val
CAC
[Ensembl]
¡û
>WENV077010
AADL01000192
Acid Mine Drainage microbial communities from Richmond mine
838
764
-
Val
CAC
[ENA]
Identical group No.675879 (2 seq.)
>W1910574142
JPUK01000003
Unclassified
Candidatus Micrarchaeum sp. AZ1 [JPUK]
192625
192697
+
Val
CAC
[ENA]
¡û
>ENV09001992
ACXJ01005137
Mine drainage metagenome Contig1
498
426
-
Val
CAC
[ENA]
¡û
Identical group No.675882 (11 seq.)
>WENV180021842
FTFC01001822
[FTFC] metagenome; soil
1852
1778
-
Val
CAC
[ENA]
¢þ
>WENV180343131
OBLK01000013
[OBLK] soil metagenome; Clay
107627
107701
+
Val
CAC
[ENA]
¢þ
>WENV181191852
OEPS010246066
[OEPS] soil metagenome; soil
257
183
-
Val
CAC
[ENA]
¢þ
>WENV181295189
OFHI01002728
[OFHI] soil metagenome; Clay
404
478
+
Val
CAC
[ENA]
¢þ
>WENV181295666
OFHJ01000126
[OFHJ] soil metagenome; Clay
18019
17945
-
Val
CAC
[ENA]
¢þ
>WENV181295941
OFHJ01002449
[OFHJ] soil metagenome; Clay
225
299
+
Val
CAC
[ENA]
¢þ
>WENV181296046
OFHJ01005333
[OFHJ] soil metagenome; Clay
913
987
+
Val
CAC
[ENA]
¢þ
>WENV170013447
AUZX01006690
[AUZX] mine drainage metagenome; uppermost (B1A) sediment-attached strata from acid streamer/mats thriving at Los Rueldos
434
360
-
Val
CAC
[ENA]
¢þ
>WENV170013718
AUZZ01000213
[AUZZ] mine drainage metagenome; submerged non-stratified mat biofilm (B2A) from acid streamer/mats thriving at Los Rueldos
83
157
+
Val
CAC
[ENA]
¢þ
>WENV170013810
AUZZ01008575
[AUZZ] mine drainage metagenome; submerged non-stratified mat biofilm (B2A) from acid streamer/mats thriving at Los Rueldos
758
684
-
Val
CAC
[ENA]
¢þ
>ENV09002009
ACXJ01006295
Mine drainage metagenome Contig1
918
844
-
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK