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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Mine drainage metagenome Contig1
Anticodon = CAG
HIT:
7 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.91063 (5 seq.)
>A171007736
LT671858
Unclassified
Cuniculiplasma divulgatum S5(T) [LT671858]
854914
855001
+
Leu
CAG
-
¡û
>A171007773
LT719092
Unclassified
Cuniculiplasma divulgatum PM4 [LT719092]
857374
857461
+
Leu
CAG
-
¡û
>W141000104
AADL01001629
Unclassified
mine drainage metagenome Group III [AADL]
3194
3281
+
Leu
CAG
[ENA]
¡û
>ENV09002213
ACXJ01011263
Mine drainage metagenome Contig1
7687
7600
-
Leu
CAG
[ENA]
¡û
>WENV077112
AADL01001629
Acid Mine Drainage microbial communities from Richmond mine
3194
3283
+
Leu
CAG
[ENA]
Identical group No.91321 (2 seq.)
>ENV09001994
ACXJ01005239
Mine drainage metagenome Contig1
729
643
-
Leu
CAG
[ENA]
¡û
>ENV09002204
ACXJ01011126
Mine drainage metagenome Contig1
1901
1987
+
Leu
CAG
[ENA]
¡û
Identical group No.91334 (3 seq.)
>ENV09002176
ACXJ01010805
Mine drainage metagenome Contig1
552
468
-
Leu
CAG
[ENA]
¡û
>ENV09002272
ACXJ01012612
Mine drainage metagenome Contig1
38397
38312
-
Leu
CAG
[ENA]
¡û
>ENV09002332
ACXL01000018
Thermoplasmatales archaeon E-plasma EplasmaContig2057
37925
37840
-
Leu
CAG
[ENA]
¡û
Identical group No.91335 (2 seq.)
>WENV181295070
OFHI01000080
[OFHI] soil metagenome; Clay
8846
8934
+
Leu
CAG
[ENA]
¢þ
>ENV09002179
ACXJ01010867
Mine drainage metagenome Contig1
3817
3903
+
Leu
CAG
[ENA]
¡û
Identical group No.112963 (5 seq.)
>WENV181296130
OFHJ01009423
[OFHJ] soil metagenome; Clay
485
401
-
Leu
CAG
[ENA]
¢þ
>WENV181406639
OGCG01000736
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
17230
17145
-
Leu
CAG
[ENA]
¢þ
>ENV09002095
ACXJ01009447
Mine drainage metagenome Contig1
1274
1358
+
Leu
CAG
[ENA]
¡û
>W1610046389
BBCH01000285
Actinomycetota
Aciditerrimonas ferrireducens JCM 15389 [BBCH]
340
254
-
Leu
CAG
[ENA]
¡û
>W1710043185
BBCH01000285
Actinomycetota
Aciditerrimonas ferrireducens JCM 15389 [BBCH]
340
254
-
Leu
CAG
[ENA]
¡û
Identical group No.119720 (1 seq.)
>ENV09002192
ACXJ01011054
Mine drainage metagenome Contig1
2597
2513
-
Leu
CAG
[ENA]
¡û
Identical group No.153680 (13 seq.)
>W1711628711
MPOJ01000010
Nitrospirota
Leptospirillum ferriphilum [MPOJ]
245676
245591
-
Leu
CAG
[ENA]
¡û
>W1711628754
MPOK01000011
Nitrospirota
Leptospirillum ferriphilum [MPOK]
787
702
-
Leu
CAG
[ENA]
¡û
>W141085061
AURA01000328
Nitrospirota
Leptospirillum sp. Group IV 'UBA BS' [AURA]
1411
1326
-
Leu
CAG
[ENA]
¡û
>W09106624
AAWO01000006
Unclassified
mine drainage metagenome rubarum [AAWO]
39716
39801
+
Leu
CAG
[ENA]
¡û
>W09132207
ACNP01000048
Unclassified
mine drainage metagenome ferrodiazotrophum [ACNP]
8676
8761
+
Leu
CAG
[ENA]
¡û
>C151019653
CP007243
Nitrospirota
Leptospirillum ferriphilum YSK [CP007243]
486435
486350
-
Leu
CAG
[Ensembl]
¡û
>C151091684
CP012147
Nitrospirota
Leptospirillum sp. Group II 'CF-1' [CP012147]
624720
624635
-
Leu
CAG
[Ensembl]
¡û
>ENV09002131
ACXJ01010284
Mine drainage metagenome Contig1
1368
1283
-
Leu
CAG
[ENA]
¡û
>ENV09002257
ACXJ01012153
Mine drainage metagenome Contig1
6144
6059
-
Leu
CAG
[ENA]
¡û
>W1511705742
LGSH01000036
Nitrospirota
Leptospirillum ferriphilum Sp-Cl [LGSH]
4711
4796
+
Leu
CAG
[ENA]
¡û
>W121055907
AIJM01000053
Unclassified
mine drainage metagenome Group II 'C75' [AIJM]
38583
38668
+
Leu
CAG
[ENA]
¡û
>C131001640
CP002919
Nitrospirota
Leptospirillum ferriphilum ML-04 [CP002919]
520637
520552
-
Leu
CAG
[Ensembl]
¡û
>WENV080241
AAWO01000006
Acid Mine Drainage microbial communities from Richmond mine
39716
39801
+
Leu
CAG
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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