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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Mine drainage metagenome Contig1
Anticodon = CCT
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.306486 (1 seq.)
>ENV09002232
ACXJ01011374
Mine drainage metagenome Contig1
612
688
+
Arg
CCT
[ENA]
¡û
Identical group No.306489 (2 seq.)
>W09132243
ACNP01000137
Unclassified
mine drainage metagenome ferrodiazotrophum [ACNP]
16879
16955
+
Arg
CCT
[ENA]
¡û
>ENV09002254
ACXJ01012086
Mine drainage metagenome Contig1
2999
3075
+
Arg
CCT
[ENA]
¡û
Identical group No.490108 (5 seq.)
>WENV181193244
OEPS011666428
[OEPS] soil metagenome; soil
111
37
-
Arg
CCT
[ENA]
¢þ
>WENV181296154
OFHJ01010960
[OFHJ] soil metagenome; Clay
394
469
+
Arg
CCT
[ENA]
¢þ
>WENV183749106
PPFU01120145
[PPFU] hypolithon metagenome; Antarctic Hypolithon
2037
1964
-
Arg
CCT
[ENA]
¢þ
>WENV170013661
AUZY01008122
[AUZY] mine drainage metagenome; lowermost (B1B) sediment-attached strata from acid streamer/mats thriving at Los Rueldos
240
313
+
Arg
CCT
[ENA]
¢þ
>ENV09001966
ACXJ01002128
Mine drainage metagenome Contig1
549
474
-
Arg
CCT
[ENA]
¡û
Identical group No.490112 (1 seq.)
>ENV09002017
ACXJ01006829
Mine drainage metagenome Contig1
796
721
-
Arg
CCT
[ENA]
¡û
Identical group No.490117 (1 seq.)
>ENV09002055
ACXJ01008274
Mine drainage metagenome Contig1
26
101
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK