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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Mine drainage metagenome Contig1
Anticodon = CTC
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.245175 (5 seq.)
>A171007743
LT671858
Unclassified
Cuniculiplasma divulgatum S5(T) [LT671858]
1327545
1327619
+
Glu
CTC
-
¡û
>A171007780
LT719092
Unclassified
Cuniculiplasma divulgatum PM4 [LT719092]
1329125
1329199
+
Glu
CTC
-
¡û
>W141000101
AADL01001619
Unclassified
mine drainage metagenome Group III [AADL]
2660
2734
+
Glu
CTC
[ENA]
¡û
>ENV09002172
ACXJ01010700
Mine drainage metagenome Contig1
1995
1921
-
Glu
CTC
[ENA]
¡û
>WENV077109
AADL01001619
Acid Mine Drainage microbial communities from Richmond mine
2660
2737
+
Glu
CTC
[ENA]
Identical group No.245457 (3 seq.)
>WENV170013773
AUZZ01004946
[AUZZ] mine drainage metagenome; submerged non-stratified mat biofilm (B2A) from acid streamer/mats thriving at Los Rueldos
74
148
+
Glu
CTC
[ENA]
¢þ
>W1910574141
JPUK01000003
Unclassified
Candidatus Micrarchaeum sp. AZ1 [JPUK]
191183
191259
+
Glu
CTC
[ENA]
¡û
>ENV09001981
ACXJ01003255
Mine drainage metagenome Contig1
755
678
-
Glu
CTC
[ENA]
¡û
Identical group No.455775 (3 seq.)
>ENV09002160
ACXJ01010594
Mine drainage metagenome Contig1
4295
4368
+
Glu
CTC
[ENA]
¡û
>W1610046403
BBCH01000956
Actinomycetota
Aciditerrimonas ferrireducens JCM 15389 [BBCH]
448
375
-
Glu
CTC
[ENA]
¡û
>W1710043199
BBCH01000956
Actinomycetota
Aciditerrimonas ferrireducens JCM 15389 [BBCH]
448
375
-
Glu
CTC
[ENA]
¡û
Identical group No.488090 (6 seq.)
>W141000005
AADL01000249
Unclassified
mine drainage metagenome Group III [AADL]
1760
1835
+
Glu
CTC
[ENA]
¡û
>W141085065
AURA01000391
Nitrospirota
Leptospirillum sp. Group IV 'UBA BS' [AURA]
344
419
+
Glu
CTC
[ENA]
¡û
>W09132238
ACNP01000103
Unclassified
mine drainage metagenome ferrodiazotrophum [ACNP]
28718
28793
+
Glu
CTC
[ENA]
¡û
>ENV09002123
ACXJ01010104
Mine drainage metagenome Contig1
2180
2255
+
Glu
CTC
[ENA]
¡û
>ENV09002161
ACXJ01010606
Mine drainage metagenome Contig1
345
420
+
Glu
CTC
[ENA]
¡û
>WENV077013
AADL01000249
Acid Mine Drainage microbial communities from Richmond mine
1760
1835
+
Glu
CTC
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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