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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Mine drainage metagenome Contig1
Anticodon = GAT
HIT:
11 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.245176 (5 seq.)
>A171007727
LT671858
Unclassified
Cuniculiplasma divulgatum S5(T) [LT671858]
243735
243809
+
Ile
GAT
-
¡û
>A171007764
LT719092
Unclassified
Cuniculiplasma divulgatum PM4 [LT719092]
222990
223064
+
Ile
GAT
-
¡û
>W141000108
AADL01001640
Unclassified
mine drainage metagenome Group III [AADL]
7773
7696
-
Ile
GAT
[ENA]
¡û
>ENV09002211
ACXJ01011262
Mine drainage metagenome Contig1
8812
8735
-
Ile
GAT
[ENA]
¡û
>WENV077116
AADL01001640
Acid Mine Drainage microbial communities from Richmond mine
7773
7696
-
Ile
GAT
[ENA]
Identical group No.245459 (2 seq.)
>WENV170013813
AUZZ01009221
[AUZZ] mine drainage metagenome; submerged non-stratified mat biofilm (B2A) from acid streamer/mats thriving at Los Rueldos
1122
1046
-
Ile
GAT
[ENA]
¢þ
>ENV09001986
ACXJ01003991
Mine drainage metagenome Contig1
915
991
+
Ile
GAT
[ENA]
¡û
Identical group No.245461 (3 seq.)
>ENV09002022
ACXJ01006989
Mine drainage metagenome Contig1
818
744
-
Ile
GAT
[ENA]
¡û
>ENV09002133
ACXJ01010297
Mine drainage metagenome Contig1
2287
2211
-
Ile
GAT
[ENA]
¡û
>ENV09002235
ACXJ01011392
Mine drainage metagenome Contig1
4582
4656
+
Ile
GAT
[ENA]
¡û
Identical group No.245463 (2 seq.)
>W1910574132
JPUK01000001
Unclassified
Candidatus Micrarchaeum sp. AZ1 [JPUK]
178477
178403
-
Ile
GAT
[ENA]
¡û
>ENV09002051
ACXJ01008098
Mine drainage metagenome Contig1
231
157
-
Ile
GAT
[ENA]
¡û
Identical group No.245464 (1 seq.)
>ENV09002056
ACXJ01008352
Mine drainage metagenome Contig1
1634
1709
+
Ile
GAT
[ENA]
¡û
Identical group No.245465 (1 seq.)
>ENV09002069
ACXJ01008866
Mine drainage metagenome Contig1
645
721
+
Ile
GAT
[ENA]
¡û
Identical group No.274594 (3 seq.)
>ENV09002041
ACXJ01007560
Mine drainage metagenome Contig1
2217
2141
-
Ile
GAT
[ENA]
¡û
>W1610046376
BBCH01000060
Actinomycetota
Aciditerrimonas ferrireducens JCM 15389 [BBCH]
2517
2441
-
Ile
GAT
[ENA]
¡û
>W1710043172
BBCH01000060
Actinomycetota
Aciditerrimonas ferrireducens JCM 15389 [BBCH]
2517
2441
-
Ile
GAT
[ENA]
¡û
Identical group No.304169 (7 seq.)
>W141000019
AADL01000473
Unclassified
mine drainage metagenome Group III [AADL]
2308
2232
-
Ile
GAT
[ENA]
¡û
>W141085067
AURA01000402
Nitrospirota
Leptospirillum sp. Group IV 'UBA BS' [AURA]
1130
1206
+
Ile
GAT
[ENA]
¡û
>WENV170013494
AUZX01012147
[AUZX] mine drainage metagenome; uppermost (B1A) sediment-attached strata from acid streamer/mats thriving at Los Rueldos
70
146
+
Ile
GAT
[ENA]
¢þ
>W09132217
ACNP01000064
Unclassified
mine drainage metagenome ferrodiazotrophum [ACNP]
20719
20643
-
Ile
GAT
[ENA]
¡û
>ENV09002018
ACXJ01006897
Mine drainage metagenome Contig1
393
469
+
Ile
GAT
[ENA]
¡û
>ENV09002165
ACXJ01010641
Mine drainage metagenome Contig1
1132
1208
+
Ile
GAT
[ENA]
¡û
>WENV077028
AADL01000473
Acid Mine Drainage microbial communities from Richmond mine
2308
2232
-
Ile
GAT
[ENA]
Identical group No.306453 (3 seq.)
>WENV181297051
OFHK01006927
[OFHK] soil metagenome; Clay
2571
2495
-
Ile
GAT
[ENA]
¢þ
>WENV181407584
OGCG01044296
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
357
432
+
Ile
GAT
[ENA]
¢þ
>ENV09001962
ACXJ01001627
Mine drainage metagenome Contig1
693
619
-
Ile
GAT
[ENA]
¡û
Identical group No.306474 (1 seq.)
>ENV09002108
ACXJ01009795
Mine drainage metagenome Contig1
2066
1990
-
Ile
GAT
[ENA]
¡û
Identical group No.789633 (1 seq.)
>ENV09001952
ACXJ01000453
Mine drainage metagenome Contig1
312
385
+
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK