This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Mine drainage metagenome Contig1
Anticodon = GGA
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.13635 (4 seq.)
>W141000004
AADL01000228
Unclassified
mine drainage metagenome Group III [AADL]
5239
5147
-
Ser
GGA
[ENA]
¡û
>W09132212
ACNP01000058
Unclassified
mine drainage metagenome ferrodiazotrophum [ACNP]
6333
6425
+
Ser
GGA
[ENA]
¡û
>ENV09002241
ACXJ01011403
Mine drainage metagenome Contig1
8597
8505
-
Ser
GGA
[ENA]
¡û
>WENV077012
AADL01000228
Acid Mine Drainage microbial communities from Richmond mine
5240
5146
-
Ser
GGA
[ENA]
Identical group No.13686 (2 seq.)
>W141085063
AURA01000369
Nitrospirota
Leptospirillum sp. Group IV 'UBA BS' [AURA]
2143
2051
-
Ser
GGA
[ENA]
¡û
>ENV09002081
ACXJ01009053
Mine drainage metagenome Contig1
380
472
+
Ser
GGA
[ENA]
¡û
Identical group No.91333 (1 seq.)
>ENV09002169
ACXJ01010654
Mine drainage metagenome Contig1
4961
5046
+
Pseudo
GGA
[ENA]
¡û
Identical group No.119718 (3 seq.)
>WENV180343296
OBLK01002080
[OBLK] soil metagenome; Clay
1291
1374
+
Ser
GGA
[ENA]
¢þ
>WENV181295726
OFHJ01000285
[OFHJ] soil metagenome; Clay
1591
1508
-
Ser
GGA
[ENA]
¢þ
>ENV09002125
ACXJ01010133
Mine drainage metagenome Contig1
982
1068
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK