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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Mine drainage metagenome Contig1
Anticodon = GTC
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.245470 (1 seq.)
>ENV09002193
ACXJ01011054
Mine drainage metagenome Contig1
2362
2287
-
Asp
GTC
[ENA]
¡û
Identical group No.306472 (2 seq.)
>W09132219
ACNP01000065
Unclassified
mine drainage metagenome ferrodiazotrophum [ACNP]
28839
28763
-
Asp
GTC
[ENA]
¡û
>ENV09002103
ACXJ01009698
Mine drainage metagenome Contig1
82
158
+
Asp
GTC
[ENA]
¡û
Identical group No.488114 (5 seq.)
>A171007742
LT671858
Unclassified
Cuniculiplasma divulgatum S5(T) [LT671858]
1218495
1218567
+
Asp
GTC
-
¡û
>A171007779
LT719092
Unclassified
Cuniculiplasma divulgatum PM4 [LT719092]
1221318
1221390
+
Asp
GTC
-
¡û
>W141000139
AADL01001966
Unclassified
mine drainage metagenome Group III [AADL]
3014
2939
-
Asp
GTC
[ENA]
¡û
>ENV09002059
ACXJ01008428
Mine drainage metagenome Contig1
600
675
+
Asp
GTC
[ENA]
¡û
>WENV077147
AADL01001966
Acid Mine Drainage microbial communities from Richmond mine
3014
2939
-
Asp
GTC
[ENA]
Identical group No.675873 (1 seq.)
>ENV09001961
ACXJ01001402
Mine drainage metagenome Contig1
864
790
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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