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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Mine drainage metagenome Contig1
Anticodon = TAG
HIT:
8 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.89057 (11 seq.)
>A171007729
LT671858
Unclassified
Cuniculiplasma divulgatum S5(T) [LT671858]
335897
335983
+
Leu
TAG
-
¡û
>A171007766
LT719092
Unclassified
Cuniculiplasma divulgatum PM4 [LT719092]
318610
318696
+
Leu
TAG
-
¡û
>W141000137
AADL01001923
Unclassified
mine drainage metagenome Group III [AADL]
2459
2548
+
Leu
TAG
[ENA]
¡û
>WENV180343219
OBLK01000260
[OBLK] soil metagenome; Clay
14641
14726
+
Leu
TAG
[ENA]
¢þ
>WENV181292296
OFHE01000053
[OFHE] soil metagenome; Clay
11267
11183
-
Leu
TAG
[ENA]
¢þ
>WENV181295037
OFHI01000020
[OFHI] soil metagenome; Clay
41118
41033
-
Leu
TAG
[ENA]
¢þ
>WENV181295086
OFHI01000139
[OFHI] soil metagenome; Clay
4158
4242
+
Leu
TAG
[ENA]
¢þ
>WENV181295789
OFHJ01000617
[OFHJ] soil metagenome; Clay
11238
11154
-
Leu
TAG
[ENA]
¢þ
>WENV181296101
OFHJ01008172
[OFHJ] soil metagenome; Clay
2163
2248
+
Leu
TAG
[ENA]
¢þ
>ENV09002098
ACXJ01009628
Mine drainage metagenome Contig1
1383
1469
+
Leu
TAG
[ENA]
¡û
>WENV077145
AADL01001923
Acid Mine Drainage microbial communities from Richmond mine
2459
2548
+
Leu
TAG
[ENA]
Identical group No.91329 (1 seq.)
>ENV09002080
ACXJ01009047
Mine drainage metagenome Contig1
1741
1827
+
Leu
TAG
[ENA]
¡û
Identical group No.91332 (3 seq.)
>WENV181406376
OGCG01000173
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
18291
18207
-
Leu
TAG
[ENA]
¢þ
>ENV09002111
ACXJ01009859
Mine drainage metagenome Contig1
2043
1959
-
Leu
TAG
[ENA]
¡û
>ENV09002343
ACXM01000003
Thermoplasmatales archaeon I-plasma
87528
87444
-
Leu
TAG
[ENA]
¡û
Identical group No.91336 (1 seq.)
>ENV09002198
ACXJ01011091
Mine drainage metagenome Contig1
4633
4719
+
Leu
TAG
[ENA]
¡û
Identical group No.153683 (14 seq.)
>W1711628714
MPOJ01000011
Nitrospirota
Leptospirillum ferriphilum [MPOJ]
79147
79232
+
Leu
TAG
[ENA]
¡û
>W1711628736
MPOK01000002
Nitrospirota
Leptospirillum ferriphilum [MPOK]
44585
44670
+
Leu
TAG
[ENA]
¡û
>W141000178
AADL01002502
Unclassified
mine drainage metagenome Group III [AADL]
17495
17410
-
Leu
TAG
[ENA]
¡û
>W09106660
AAWO01000082
Unclassified
mine drainage metagenome rubarum [AAWO]
103334
103249
-
Leu
TAG
[ENA]
¡û
>W141803168
JPGK01000011
Nitrospirota
Leptospirillum ferriphilum [JPGK]
2817
2732
-
Leu
TAG
[ENA]
¡û
>W1911494737
OBMB01000001
Nitrospirota
Leptospirillum ferriphilum [OBMB]
609043
608958
-
Leu
TAG
[ENA]
¡û
>C151019640
CP007243
Nitrospirota
Leptospirillum ferriphilum YSK [CP007243]
1486729
1486644
-
Leu
TAG
[Ensembl]
¡û
>C151091652
CP012147
Nitrospirota
Leptospirillum sp. Group II 'CF-1' [CP012147]
986203
986288
+
Leu
TAG
[Ensembl]
¡û
>ENV09002102
ACXJ01009679
Mine drainage metagenome Contig1
2919
3004
+
Leu
TAG
[ENA]
¡û
>W1511705725
LGSH01000006
Nitrospirota
Leptospirillum ferriphilum Sp-Cl [LGSH]
58468
58553
+
Leu
TAG
[ENA]
¡û
>W121055898
AIJM01000034
Unclassified
mine drainage metagenome Group II 'C75' [AIJM]
30393
30478
+
Leu
TAG
[ENA]
¡û
>C131001627
CP002919
Nitrospirota
Leptospirillum ferriphilum ML-04 [CP002919]
1535374
1535289
-
Leu
TAG
[Ensembl]
¡û
>WENV077006
AADL01000098
Acid Mine Drainage microbial communities from Richmond mine
3034
2949
-
Leu
TAG
[ENA]
>WENV080280
AAWO01000082
Acid Mine Drainage microbial communities from Richmond mine
103334
103249
-
Leu
TAG
[ENA]
Identical group No.219889 (1 seq.)
>ENV09002088
ACXJ01009343
Mine drainage metagenome Contig1
1794
1711
-
Leu
TAG
[ENA]
¡û
Identical group No.219891 (1 seq.)
>ENV09002174
ACXJ01010712
Mine drainage metagenome Contig1
2583
2664
+
Leu
TAG
[ENA]
¡û
Identical group No.219893 (2 seq.)
>W09132232
ACNP01000079
Unclassified
mine drainage metagenome ferrodiazotrophum [ACNP]
127809
127726
-
Leu
TAG
[ENA]
¡û
>ENV09002268
ACXJ01012533
Mine drainage metagenome Contig1
473
390
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK