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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Mine drainage metagenome Contig1
Anticodon = TCG
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.245460 (2 seq.)
>ENV09002015
ACXJ01006641
Mine drainage metagenome Contig1
1053
977
-
Arg
TCG
[ENA]
¡û
>ENV09002365
ACXM01000006
Thermoplasmatales archaeon I-plasma
190436
190360
-
Arg
TCG
[ENA]
¡û
Identical group No.304165 (5 seq.)
>W141000001
AADL01000190
Unclassified
mine drainage metagenome Group III [AADL]
10112
10188
+
Arg
TCG
[ENA]
¡û
>W141085073
AURA01000665
Nitrospirota
Leptospirillum sp. Group IV 'UBA BS' [AURA]
493
569
+
Arg
TCG
[ENA]
¡û
>W09132244
ACNP01000138
Unclassified
mine drainage metagenome ferrodiazotrophum [ACNP]
13053
13129
+
Arg
TCG
[ENA]
¡û
>ENV09002186
ACXJ01011017
Mine drainage metagenome Contig1
456
532
+
Arg
TCG
[ENA]
¡û
>WENV077009
AADL01000190
Acid Mine Drainage microbial communities from Richmond mine
10112
10188
+
Arg
TCG
[ENA]
Identical group No.306467 (1 seq.)
>ENV09002089
ACXJ01009348
Mine drainage metagenome Contig1
217
293
+
Arg
TCG
[ENA]
¡û
Identical group No.306477 (2 seq.)
>ENV09002146
ACXJ01010460
Mine drainage metagenome Contig1
505
431
-
Arg
TCG
[ENA]
¡û
>ENV09002290
ACXK01000065
Thermoplasmatales archaeon A-plasma AplasmaContig10144
39068
38994
-
Arg
TCG
[ENA]
¡û
Identical group No.306487 (1 seq.)
>ENV09002236
ACXJ01011394
Mine drainage metagenome Contig1
22245
22171
-
Arg
TCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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