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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Mine drainage metagenome Contig1
Anticodon = TTT
HIT:
7 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.304177 (5 seq.)
>A171007749
LT671858
Unclassified
Cuniculiplasma divulgatum S5(T) [LT671858]
1469440
1469367
-
Lys
TTT
-
¡û
>A171007786
LT719092
Unclassified
Cuniculiplasma divulgatum PM4 [LT719092]
1463617
1463544
-
Lys
TTT
-
¡û
>W141000099
AADL01001607
Unclassified
mine drainage metagenome Group III [AADL]
11000
10927
-
Lys
TTT
[ENA]
¡û
>ENV09002060
ACXJ01008440
Mine drainage metagenome Contig1
1374
1447
+
Lys
TTT
[ENA]
¡û
>WENV077108
AADL01001607
Acid Mine Drainage microbial communities from Richmond mine
11000
10924
-
Lys
TTT
[ENA]
Identical group No.306456 (2 seq.)
>ENV09001998
ACXJ01005511
Mine drainage metagenome Contig1
713
786
+
Lys
TTT
[ENA]
¡û
>ENV09002287
ACXK01000064
Thermoplasmatales archaeon A-plasma AplasmaContig10144
45382
45455
+
Lys
TTT
[ENA]
¡û
Identical group No.306485 (1 seq.)
>ENV09002217
ACXJ01011274
Mine drainage metagenome Contig1
9826
9900
+
Lys
TTT
[ENA]
¡û
Identical group No.306488 (1 seq.)
>ENV09002243
ACXJ01011405
Mine drainage metagenome Contig1
2840
2767
-
Lys
TTT
[ENA]
¡û
Identical group No.490105 (4 seq.)
>W141816875
JQKF01000009
Actinomycetota
Ferrimicrobium acidiphilum DSM 19497 [JQKF]
95752
95827
+
Lys
TTT
[ENA]
¡û
>ENV09001946
ACXJ01000112
Mine drainage metagenome Contig1
528
453
-
Lys
TTT
[ENA]
¡û
>W1511512933
JXUW01000003
Actinomycetota
Ferrimicrobium acidiphilum DSM 19497 T23 [JXUW]
13786
13711
-
Lys
TTT
[ENA]
¡û
>W1710583042
FQUL01000057
Actinomycetota
Ferrithrix thermotolerans DSM 19514 [FQUL]
3327
3254
-
Lys
TTT
[ENA]
¡û
Identical group No.490138 (1 seq.)
>ENV09002140
ACXJ01010363
Mine drainage metagenome Contig1
369
442
+
Lys
TTT
[ENA]
¡û
Identical group No.490151 (1 seq.)
>ENV09002263
ACXJ01012491
Mine drainage metagenome Contig1
25518
25443
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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