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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Myoviridae
Anticodon = CTG
HIT:
23 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.271547 (2 seq.)
>PHG14100069
EU710883
Myoviridae
Erwinia phage phiEa21-4 phiSG-JL2 (EU710883)
24990
25066
+
Gln
CTG
[ENA]
¡û
>PHG14100167
FQ482083
Myoviridae
Erwinia phage phiEa104 phi 2 (FQ482083)
24981
25057
+
Gln
CTG
[ENA]
¡û
Identical group No.271557 (1 seq.)
>PHG14100809
HQ728263
Myoviridae
Erwinia phage vB_Eam-MM7 EcoS-CEV2 (HQ728263)
7966
8042
+
Gln
CTG
[ENA]
¡û
Identical group No.477213 (29 seq.)
>WENV182826595
OKCT01000022
[OKCT] human gut metagenome; human gut
72170
72095
-
Gln
CTG
[ENA]
¢þ
>WENV182827494
OKDA01000001
[OKDA] human gut metagenome; human gut
68083
68008
-
Gln
CTG
[ENA]
¢þ
>WENV182837012
OKGB01000001
[OKGB] human gut metagenome; human gut
44179
44254
+
Gln
CTG
[ENA]
¢þ
>WENV182851097
OKLK01000001
[OKLK] human gut metagenome; human gut
30620
30545
-
Gln
CTG
[ENA]
¢þ
>WENV183778384
PPYF01120176
[PPYF] human gut metagenome; stool from patient with Crohn's disease
1370
1445
+
Gln
CTG
[ENA]
¢þ
>WENV183784651
PPYF01267234
[PPYF] human gut metagenome; stool from patient with Crohn's disease
17323
17398
+
Gln
CTG
[ENA]
¢þ
>PHG0100052
AF320576
Myoviridae
Salmonella phage FelixO1 URLIE 9 (AF320576)
28990
29065
+
Gln
CTG
[ENA]
¡û
>PHG181000838
KP143762
Myoviridae
Salmonella phage Mushroom (KP143762)
61778
61703
-
Gln
CTG
[ENA]
¡û
>PHG181001028
KP869100
Myoviridae
Escherichia typing phage 1 (KP869100)
11388
11313
-
Gln
CTG
[ENA]
¡û
>PHG181001070
KP869106
Myoviridae
Escherichia coli O157 typing phage 8 (KP869106)
49216
49291
+
Gln
CTG
[ENA]
¡û
>PHG181001092
KP869109
Myoviridae
Escherichia coli O157 typing phage 11 (KP869109)
28396
28471
+
Gln
CTG
[ENA]
¡û
>PHG181001106
KP869110
Myoviridae
Escherichia coli O157 typing phage 12 (KP869110)
85857
85782
-
Gln
CTG
[ENA]
¡û
>PHG181001136
KP869113
Myoviridae
Escherichia coli O157 typing phage 15 (KP869113)
28856
28781
-
Gln
CTG
[ENA]
¡û
>PHG181003219
KX377933
Myoviridae
Escherichia phage vB_EcoM_Alf5 (KX377933)
28270
28345
+
Gln
CTG
[ENA]
¡û
>PHG181003317
KX405003
Myoviridae
Salmonella phage BPS15Q2 (KX405003)
15297
15372
+
Gln
CTG
[ENA]
¡û
>PHG181004221
KY626162
Myoviridae
Salmonella phage Si3 (KY626162)
5208
5283
+
Gln
CTG
[ENA]
¡û
>PHG181005559
MF370225
Myoviridae
Salmonella phage ST11 (MF370225)
27048
27123
+
Gln
CTG
[ENA]
¡û
>PHG181006731
MG251391
Myoviridae
Salmonella virus VSe11 (MG251391)
26306
26381
+
Gln
CTG
[ENA]
¡û
>PHG181006747
MG251392
Myoviridae
Salmonella virus VSe102 (MG251392)
26339
26414
+
Gln
CTG
[ENA]
¡û
>PHG181007020
MG646672
Myoviridae
Salmonella phage BPS17L1 (MG646672)
70101
70026
-
Gln
CTG
[ENA]
¡û
>PHG181007449
MG969406
Myoviridae
Salmonella phage GE_vB_B3 (MG969406)
14419
14494
+
Gln
CTG
[ENA]
¡û
>PHG181007463
MG969406
Myoviridae
Salmonella phage GE_vB_B3 (MG969406)
101135
101210
+
Gln
CTG
[ENA]
¡û
>PHG181007476
MG969407
Myoviridae
Salmonella phage GE_vB_BS (MG969407)
77943
77868
-
Gln
CTG
[ENA]
¡û
>PHG181007489
MG969407
Myoviridae
Salmonella phage GE_vB_BS (MG969407)
39431
39356
-
Gln
CTG
[ENA]
¡û
>PHG14100088
EU877232
Myoviridae
Escherichia phage wV8 N4 (EU877232)
30366
30441
+
Gln
CTG
[ENA]
¡û
>PHG14100861
JF461087
Myoviridae
Salmonella phage FO1a PAS-1 (JF461087)
28912
28987
+
Gln
CTG
[ENA]
¡û
>PHG14101084
JN225449
Myoviridae
Enterobacteriaphage UAB_Phi87 Sebata (JN225449)
87100
87025
-
Gln
CTG
[ENA]
¡û
>PHG14101838
JX181816
unclassified bacterial viruses
Salmonella phage SBA-1781 (JX181816)
12833
12908
+
Gln
CTG
[ENA]
¡û
>PHG14101851
JX181822
Myoviridae
Salmonella phage SPT-1 (JX181822)
50429
50354
-
Gln
CTG
[ENA]
¡û
Identical group No.498902 (11 seq.)
>WENV181195580
OEQT01005190
[OEQT] metagenome; water of meat washing
729
654
-
Gln
CTG
[ENA]
¢þ
>WENV181201571
OERO01005642
[OERO] metagenome; water of meat washing
404
479
+
Gln
CTG
[ENA]
¢þ
>WENV182611444
OJJX01000084
[OJJX] metagenome; faeces
138
213
+
Gln
CTG
[ENA]
¢þ
>WENV170559992
CYGL01000008
[CYGL] human gut metagenome;
99632
99557
-
Gln
CTG
[ENA]
¢þ
>WENV170560008
CYGL01000008
[CYGL] human gut metagenome;
11177
11102
-
Gln
CTG
[ENA]
¢þ
>PHG181000742
KM092515
Myoviridae
Escherichia phage HY02 (KM092515)
28976
29051
+
Gln
CTG
[ENA]
¡û
>PHG181000786
KP010413
Myoviridae
Salmonella phage vB_SPuM_SP116 (KP010413)
30581
30656
+
Gln
CTG
[ENA]
¡û
>PHG181007437
MG969404
Myoviridae
Salmonella phage GE_vB_7A (MG969404)
14643
14718
+
Gln
CTG
[ENA]
¡û
>PHG14101960
JX560968
Myoviridae
Escherichia phage EC6 JBD67 (JX560968)
16001
16076
+
Gln
CTG
[ENA]
¡û
>PHG14102512
KF055347
Myoviridae
Escherichia phage JH2 phi47:1 (KF055347)
70802
70727
-
Gln
CTG
[ENA]
¡û
>W1810333674
PURB01000035
Gammaproteobacteria
Escherichia coli KOS_SD04_1507_Eco_073 [PURB]
17046
16971
-
Gln
CTG
[ENA]
¡û
Identical group No.504399 (8 seq.)
>PHG181001370
KT001916
Myoviridae
Citrobacter phage Michonne (KT001916)
59757
59682
-
Gln
CTG
[ENA]
¡û
>PHG181001605
KT363872
Myoviridae
Citrobacter phage Mordin (KT363872)
31782
31857
+
Gln
CTG
[ENA]
¡û
>PHG181005021
MF158040
Myoviridae
Shigella phage Sf13 (MF158040)
12849
12774
-
Gln
CTG
[ENA]
¡û
>PHG181005040
MF158041
Myoviridae
Shigella phage Sf15 (MF158041)
68612
68537
-
Gln
CTG
[ENA]
¡û
>PHG181005082
MF158044
Myoviridae
Shigella phage Sf18 (MF158044)
70080
70155
+
Gln
CTG
[ENA]
¡û
>PHG181005234
MF327003
Myoviridae
Shigella phage Sf14 (MF327003)
17569
17644
+
Gln
CTG
[ENA]
¡û
>PHG181005254
MF327004
Myoviridae
Shigella phage Sf17 (MF327004)
16699
16774
+
Gln
CTG
[ENA]
¡û
>PHG181005274
MF327005
Myoviridae
Shigella phage Sf19 (MF327005)
17294
17369
+
Gln
CTG
[ENA]
¡û
Identical group No.504435 (2 seq.)
>PHG181004307
KY654690
Myoviridae
Citrobacter phage Mijalis (KY654690)
61518
61443
-
Gln
CTG
[ENA]
¡û
>PHG14103086
KM236239
Myoviridae
Citrobacter phage Moogle LIKBL0011 (KM236239)
61518
61443
-
Gln
CTG
[ENA]
¡û
Identical group No.523535 (3 seq.)
>PHG181006962
MG646669
Myoviridae
Salmonella phage BPS17W1 (MG646669)
73016
72941
-
Gln
CTG
[ENA]
¡û
>PHG181006978
MG646670
Myoviridae
Salmonella phage BPS15S6 (MG646670)
3695
3770
+
Gln
CTG
[ENA]
¡û
>PHG181007000
MG646671
Myoviridae
Salmonella phage BPS17S6 (MG646671)
13787
13862
+
Gln
CTG
[ENA]
¡û
Identical group No.525412 (5 seq.)
>WENV183770274
PPYE01433188
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
305
230
-
Gln
CTG
[ENA]
¢þ
>PHG181001170
KR014248
Myoviridae
Escherichia phage vB_EcoM_AYO145A (KR014248)
30138
30213
+
Gln
CTG
[ENA]
¡û
>PHG14102054
KC139527
Myoviridae
Salmonella phage FSL SP-010 TN106 (KC139527)
21711
21636
-
Gln
CTG
[ENA]
¡û
>PHG14102073
KC139543
Myoviridae
Salmonella phage FSL SP-012 TN106 (KC139543)
21713
21638
-
Gln
CTG
[ENA]
¡û
>PHG14103325
KM657822
Myoviridae
Escherichia phage vB_EcoM-VpaE1 DSS3-P1 (KM657822)
29131
29206
+
Gln
CTG
[ENA]
¡û
Identical group No.561456 (1 seq.)
>PHG181007709
MH051914
Myoviridae
Enterobacteria phage vB_EcoM_IME338 (MH051914)
29480
29555
+
Gln
CTG
[ENA]
¡û
Identical group No.562767 (2 seq.)
>WENV182536957
OIXH01002422
[OIXH] human gut metagenome; faeces
14530
14605
+
Gln
CTG
[ENA]
¢þ
>PHG14102091
KC139640
Myoviridae
Salmonella phage FSL SP-107 TN106 (KC139640)
21708
21633
-
Gln
CTG
[ENA]
¡û
Identical group No.581864 (1 seq.)
>PHG181005062
MF158043
Myoviridae
Shigella phage Sf16 (MF158043)
19923
19998
+
Gln
CTG
[ENA]
¡û
Identical group No.592229 (2 seq.)
>PHG181001689
KT454805
Myoviridae
Escherichia phage SUSP1 (KT454805)
89124
89199
+
Gln
CTG
[ENA]
¡û
>PHG181001709
KT454806
Myoviridae
Escherichia phage SUSP2 (KT454806)
87079
87154
+
Gln
CTG
[ENA]
¡û
Identical group No.628090 (1 seq.)
>PHG14100333
GU169904
Myoviridae
Staphylococcus phage SA1 B11 (GU169904)
62109
62184
+
Gln
CTG
[ENA]
¡û
Identical group No.669950 (21 seq.)
>PHG181001239
KR080196
Myoviridae
Mycobacterium phage Momo (KR080196)
125188
125262
+
Gln
CTG
[ENA]
¡û
>PHG181001553
KT321476
Myoviridae
Mycobacterium phage Zeenon (KT321476)
126474
126548
+
Gln
CTG
[ENA]
¡û
>PHG181001631
KT365398
Myoviridae
Mycobacterium phage DTDevon (KT365398)
127929
128003
+
Gln
CTG
[ENA]
¡û
>PHG181001652
KT365400
Myoviridae
Mycobacterium phage ErnieJ (KT365400)
123129
123203
+
Gln
CTG
[ENA]
¡û
>PHG181003200
KX369583
Myoviridae
Mycobacterium phage Littleton (KX369583)
126425
126499
+
Gln
CTG
[ENA]
¡û
>PHG181003516
KX721255
Myoviridae
Mycobacterium phage Yucca (KX721255)
126834
126908
+
Gln
CTG
[ENA]
¡û
>PHG181003540
KX721256
Myoviridae
Mycobacterium phage Erdmann (KX721256)
126301
126375
+
Gln
CTG
[ENA]
¡û
>PHG181003602
KX781992
Myoviridae
Mycobacterium phage Gabriel (KX781992)
124821
124895
+
Gln
CTG
[ENA]
¡û
>PHG181003640
KX831080
Myoviridae
Mycobacterium phage Lukilu (KX831080)
126638
126712
+
Gln
CTG
[ENA]
¡û
>PHG181006185
MF919493
Myoviridae
Mycobacterium phage Audrick (MF919493)
125078
125152
+
Gln
CTG
[ENA]
¡û
>PHG181006208
MF919494
Myoviridae
Mycobacterium phage BeanWater (MF919494)
125033
125107
+
Gln
CTG
[ENA]
¡û
>PHG181006232
MF919495
Myoviridae
Mycobacterium phage Bigswole (MF919495)
127755
127829
+
Gln
CTG
[ENA]
¡û
>PHG181006255
MF919499
Myoviridae
Mycobacterium phage Daffodil (MF919499)
126216
126290
+
Gln
CTG
[ENA]
¡û
>PHG181007338
MG812493
Myoviridae
Mycobacterium phage NuevoMundo (MG812493)
127173
127247
+
Gln
CTG
[ENA]
¡û
>PHG181007360
MG812494
Myoviridae
Mycobacterium phage Pier (MG812494)
126718
126792
+
Gln
CTG
[ENA]
¡û
>PHG181007386
MG872839
Myoviridae
Mycobacterium phage LifeSavor (MG872839)
126416
126490
+
Gln
CTG
[ENA]
¡û
>PHG181007646
MH051260
Myoviridae
Mycobacterium phage InterFolia (MH051260)
126654
126728
+
Gln
CTG
[ENA]
¡û
>PHG181007670
MH051261
Myoviridae
Mycobacterium phage Tyke (MH051261)
127916
127990
+
Gln
CTG
[ENA]
¡û
>PHG181007692
MH051266
Myoviridae
Mycobacterium phage MikeLiesIn (MH051266)
127098
127172
+
Gln
CTG
[ENA]
¡û
>PHG181007970
MH316561
Myoviridae
Mycobacterium phage Derek (MH316561)
126566
126640
+
Gln
CTG
[ENA]
¡û
>PHG181007997
MH316567
Myoviridae
Mycobacterium phage ParkTD (MH316567)
126188
126262
+
Gln
CTG
[ENA]
¡û
Identical group No.669951 (2 seq.)
>PHG181006281
MF919513
Myoviridae
Mycobacterium phage Koguma (MF919513)
125283
125357
+
Gln
CTG
[ENA]
¡û
>PHG181006311
MF919527
Myoviridae
Mycobacterium phage Phox (MF919527)
125841
125915
+
Gln
CTG
[ENA]
¡û
Identical group No.731951 (1 seq.)
>PHG181003565
KX752698
Myoviridae
Mycobacterium phage Tonenili (KX752698)
131096
131170
+
Gln
CTG
[ENA]
¡û
Identical group No.738435 (2 seq.)
>PHG181000072
AP018399
Myoviridae
Xanthomonas phage XacN1 (AP018399)
42943
43017
+
Gln
CTG
[ENA]
¡û
>PHG181000097
AP018399
Myoviridae
Xanthomonas phage XacN1 (AP018399)
361738
361812
+
Gln
CTG
[ENA]
¡û
Identical group No.770389 (1 seq.)
>PHG181001482
KT281790
Myoviridae
Mycobacterium phage HyRo (KT281790)
125143
125217
+
Gln
CTG
[ENA]
¡û
Identical group No.802050 (1 seq.)
>PHG181006002
MF668280
Myoviridae
Mycobacterium phage Phabba (MF668280)
122516
122587
+
Gln
CTG
[ENA]
¡û
Identical group No.806784 (1 seq.)
>PHG0100523
EU826466
Myoviridae
Mycobacterium phage Myrna N4 (EU826466)
122545
122616
+
Gln
CTG
[ENA]
¡û
Identical group No.814998 (1 seq.)
>PHG181005603
MF403008
Myoviridae
Agrobacterium phage Atu_ph07 (MF403008)
336058
335985
-
Gln
CTG
[ENA]
¡û
Identical group No.823675 (1 seq.)
>PHG183000390
KU682439
Myoviridae
Stenotrophomonas phage vB_SmaS-DLP_6 (KU682439)
110348
110421
+
Gln
CTG
[ENA]
¡û
Identical group No.835217 (1 seq.)
>PHG181003672
KX925554
Myoviridae
Streptomyces phage BRock (KX925554)
106386
106315
-
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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