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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Myoviridae
Anticodon = CTT
HIT:
20 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.271551 (3 seq.)
>PHG14100058
EU710883
Myoviridae
Erwinia phage phiEa21-4 phiSG-JL2 (EU710883)
23458
23534
+
Lys
CTT
[ENA]
¡û
>PHG14100156
FQ482083
Myoviridae
Erwinia phage phiEa104 phi 2 (FQ482083)
23448
23524
+
Lys
CTT
[ENA]
¡û
>PHG14100801
HQ728263
Myoviridae
Erwinia phage vB_Eam-MM7 EcoS-CEV2 (HQ728263)
6433
6509
+
Lys
CTT
[ENA]
¡û
Identical group No.347539 (2 seq.)
>PHG181004722
LT960551
Myoviridae
Yersinia phage fHe-Yen9-04 (LT960551)
321262
321338
+
Lys
CTT
[ENA]
¡û
>PHG181004750
LT960552
Myoviridae
Yersinia phage fHe-Yen9-03 (LT960552)
319217
319293
+
Lys
CTT
[ENA]
¡û
Identical group No.363235 (1 seq.)
>PHG0200046
EU826466
Myoviridae
Mycobacterium phage Myrna N4 (EU826466)
93647
93721
+
Lys
CTT
[ENA]
¡û
Identical group No.370707 (1 seq.)
>PHG181001312
KR560069
Myoviridae
Stenotrophomonas phage IME-SM1 (KR560069)
2716
2792
+
Lys
CTT
[ENA]
¡û
Identical group No.407100 (1 seq.)
>PHG14100702
HQ615693
Myoviridae
Synechococcus phage S-CRM01 VH-P22 (HQ615693)
141838
141913
+
Lys
CTT
[ENA]
¡û
Identical group No.414289 (1 seq.)
>PHG181004269
KY630187
Myoviridae
Serratia phage BF (KY630187)
317955
318031
+
Lys
CTT
[ENA]
¡û
Identical group No.452539 (2 seq.)
>PHG14100254
GU070616
Myoviridae
Salmonella phage PVP-SE1 PaP1 (GU070616)
69271
69196
-
Lys
CTT
[ENA]
¡û
>PHG14101870
JX181824
Myoviridae
Salmonella phage SSE121 SSE-121 (JX181824)
145584
145659
+
Lys
CTT
[ENA]
¡û
Identical group No.473038 (2 seq.)
>WENV181844930
OGVW01051731
[OGVW] freshwater metagenome; freshwater
226
151
-
Lys
CTT
[ENA]
¢þ
>PHG181002146
KU682439
Myoviridae
Stenotrophomonas phage vB_SmaS-DLP_6 (KU682439)
112656
112731
+
Lys
CTT
[ENA]
¡û
Identical group No.480680 (3 seq.)
>PHG183000299
KT934943
Myoviridae
Klebsiella phage vB_KpnM_KB57 (KT934943)
66994
66919
-
Lys
CTT
[ENA]
¡û
>PHG183000475
KX452695
Myoviridae
Klebsiella phage KNP2 KPN2 (KX452695)
56947
56872
-
Lys
CTT
[ENA]
¡û
>PHG183000682
KY652726
Myoviridae
Klebsiella phage vB_KpnM_BIS47 (KY652726)
49867
49792
-
Lys
CTT
[ENA]
¡û
Identical group No.480736 (13 seq.)
>PHG0100595
EU826471
Myoviridae
Mycobacterium phage Cali N4 (EU826471)
94923
94996
+
Lys
CTT
[ENA]
¡û
>PHG181001473
KT281790
Myoviridae
Mycobacterium phage HyRo (KT281790)
93712
93785
+
Lys
CTT
[ENA]
¡û
>PHG181003631
KX831080
Myoviridae
Mycobacterium phage Lukilu (KX831080)
95200
95273
+
Lys
CTT
[ENA]
¡û
>PHG181006199
MF919494
Myoviridae
Mycobacterium phage BeanWater (MF919494)
93776
93849
+
Lys
CTT
[ENA]
¡û
>PHG181006222
MF919495
Myoviridae
Mycobacterium phage Bigswole (MF919495)
96531
96604
+
Lys
CTT
[ENA]
¡û
>PHG181006271
MF919513
Myoviridae
Mycobacterium phage Koguma (MF919513)
92334
92407
+
Lys
CTT
[ENA]
¡û
>PHG181006301
MF919527
Myoviridae
Mycobacterium phage Phox (MF919527)
95224
95297
+
Lys
CTT
[ENA]
¡û
>PHG181007329
MG812493
Myoviridae
Mycobacterium phage NuevoMundo (MG812493)
97106
97179
+
Lys
CTT
[ENA]
¡û
>PHG181007379
MG872839
Myoviridae
Mycobacterium phage LifeSavor (MG872839)
94270
94343
+
Lys
CTT
[ENA]
¡û
>PHG181007660
MH051261
Myoviridae
Mycobacterium phage Tyke (MH051261)
95598
95671
+
Lys
CTT
[ENA]
¡û
>PHG181007961
MH316561
Myoviridae
Mycobacterium phage Derek (MH316561)
94784
94857
+
Lys
CTT
[ENA]
¡û
>PHG14100227
GQ303262
Myoviridae
Mycobacterium phage LRRHood ATCC 35860-B1 (GQ303262)
94190
94263
+
Lys
CTT
[ENA]
¡û
>PHG14101308
JN699627
Myoviridae
Mycobacterium phage Nappy (JN699627)
95501
95574
+
Lys
CTT
[ENA]
¡û
Identical group No.504373 (37 seq.)
>PHG0300010
AF320576
Myoviridae
Salmonella phage FelixO1 URLIE 9 (AF320576)
27060
27135
+
Lys
CTT
[ENA]
¡û
>PHG183000037
KM092515
Myoviridae
Escherichia phage HY02 (KM092515)
27575
27650
+
Lys
CTT
[ENA]
¡û
>PHG183000057
KP010413
Myoviridae
Salmonella phage vB_SPuM_SP116 (KP010413)
29072
29147
+
Lys
CTT
[ENA]
¡û
>PHG183000072
KP143762
Myoviridae
Salmonella phage Mushroom (KP143762)
63095
63020
-
Lys
CTT
[ENA]
¡û
>PHG183000093
KP869100
Myoviridae
Escherichia typing phage 1 (KP869100)
13025
12950
-
Lys
CTT
[ENA]
¡û
>PHG183000101
KP869106
Myoviridae
Escherichia coli O157 typing phage 8 (KP869106)
47579
47654
+
Lys
CTT
[ENA]
¡û
>PHG183000107
KP869109
Myoviridae
Escherichia coli O157 typing phage 11 (KP869109)
26759
26834
+
Lys
CTT
[ENA]
¡û
>PHG183000110
KP869110
Myoviridae
Escherichia coli O157 typing phage 12 (KP869110)
87494
87419
-
Lys
CTT
[ENA]
¡û
>PHG183000121
KP869113
Myoviridae
Escherichia coli O157 typing phage 15 (KP869113)
30570
30495
-
Lys
CTT
[ENA]
¡û
>PHG183000126
KR014248
Myoviridae
Escherichia phage vB_EcoM_AYO145A (KR014248)
28738
28813
+
Lys
CTT
[ENA]
¡û
>PHG183000189
KT001916
Myoviridae
Citrobacter phage Michonne (KT001916)
60755
60680
-
Lys
CTT
[ENA]
¡û
>PHG183000239
KT363872
Myoviridae
Citrobacter phage Mordin (KT363872)
30785
30860
+
Lys
CTT
[ENA]
¡û
>PHG183000264
KT454805
Myoviridae
Escherichia phage SUSP1 (KT454805)
87547
87622
+
Lys
CTT
[ENA]
¡û
>PHG183000269
KT454806
Myoviridae
Escherichia phage SUSP2 (KT454806)
85499
85574
+
Lys
CTT
[ENA]
¡û
>PHG183000472
KX405003
Myoviridae
Salmonella phage BPS15Q2 (KX405003)
13475
13550
+
Lys
CTT
[ENA]
¡û
>PHG183000669
KY626162
Myoviridae
Salmonella phage Si3 (KY626162)
4631
4706
+
Lys
CTT
[ENA]
¡û
>PHG183000691
KY654690
Myoviridae
Citrobacter phage Mijalis (KY654690)
62512
62437
-
Lys
CTT
[ENA]
¡û
>PHG183000829
MF158040
Myoviridae
Shigella phage Sf13 (MF158040)
13846
13771
-
Lys
CTT
[ENA]
¡û
>PHG183000836
MF158041
Myoviridae
Shigella phage Sf15 (MF158041)
69609
69534
-
Lys
CTT
[ENA]
¡û
>PHG183000841
MF158043
Myoviridae
Shigella phage Sf16 (MF158043)
18927
19002
+
Lys
CTT
[ENA]
¡û
>PHG183000846
MF158044
Myoviridae
Shigella phage Sf18 (MF158044)
68847
68922
+
Lys
CTT
[ENA]
¡û
>PHG183000875
MF327003
Myoviridae
Shigella phage Sf14 (MF327003)
16576
16651
+
Lys
CTT
[ENA]
¡û
>PHG183000881
MF327004
Myoviridae
Shigella phage Sf17 (MF327004)
15466
15541
+
Lys
CTT
[ENA]
¡û
>PHG183000886
MF327005
Myoviridae
Shigella phage Sf19 (MF327005)
16061
16136
+
Lys
CTT
[ENA]
¡û
>PHG183000938
MF370225
Myoviridae
Salmonella phage ST11 (MF370225)
25429
25504
+
Lys
CTT
[ENA]
¡û
>PHG183001178
MG065664
Myoviridae
Campylobacter phage A132 (MG065664)
1944
2019
+
Lys
CTT
[ENA]
¡û
>PHG183001210
MG251391
Myoviridae
Salmonella virus VSe11 (MG251391)
24989
25064
+
Lys
CTT
[ENA]
¡û
>PHG183001215
MG251392
Myoviridae
Salmonella virus VSe102 (MG251392)
25022
25097
+
Lys
CTT
[ENA]
¡û
>PHG183001301
MG646669
Myoviridae
Salmonella phage BPS17W1 (MG646669)
74334
74259
-
Lys
CTT
[ENA]
¡û
>PHG183001305
MG646670
Myoviridae
Salmonella phage BPS15S6 (MG646670)
2377
2452
+
Lys
CTT
[ENA]
¡û
>PHG183001311
MG646671
Myoviridae
Salmonella phage BPS17S6 (MG646671)
12469
12544
+
Lys
CTT
[ENA]
¡û
>PHG183001318
MG646672
Myoviridae
Salmonella phage BPS17L1 (MG646672)
71500
71425
-
Lys
CTT
[ENA]
¡û
>PHG183001443
MG969404
Myoviridae
Salmonella phage GE_vB_7A (MG969404)
13242
13317
+
Lys
CTT
[ENA]
¡û
>PHG183001459
MG969406
Myoviridae
Salmonella phage GE_vB_B3 (MG969406)
99822
99897
+
Lys
CTT
[ENA]
¡û
>PHG183001468
MG969407
Myoviridae
Salmonella phage GE_vB_BS (MG969407)
79260
79185
-
Lys
CTT
[ENA]
¡û
>PHG183001479
MG969407
Myoviridae
Salmonella phage GE_vB_BS (MG969407)
40744
40669
-
Lys
CTT
[ENA]
¡û
>PHG183001566
MH051914
Myoviridae
Enterobacteria phage vB_EcoM_IME338 (MH051914)
28902
28977
+
Lys
CTT
[ENA]
¡û
Identical group No.553390 (1 seq.)
>PHG0100514
EU826466
Myoviridae
Mycobacterium phage Myrna N4 (EU826466)
93732
93805
+
Lys
CTT
[ENA]
¡û
Identical group No.561427 (3 seq.)
>PHG181001292
KR296695
Myoviridae
Salmonella phage 41 (KR296695)
85796
85871
+
Lys
CTT
[ENA]
¡û
>PHG14101384
JN882284
Myoviridae
Cronobacter phage vB_CsaM_GAP31 JBD26 (JN882284)
85032
85107
+
Lys
CTT
[ENA]
¡û
>PHG14102577
KF550303
Myoviridae
Escherichia phage 4MG QB3 (KF550303)
66107
66032
-
Lys
CTT
[ENA]
¡û
Identical group No.581870 (1 seq.)
>PHG181005594
MF403008
Myoviridae
Agrobacterium phage Atu_ph07 (MF403008)
390848
390923
+
Lys
CTT
[ENA]
¡û
Identical group No.646287 (1 seq.)
>PHG181003684
KX925554
Myoviridae
Streptomyces phage BRock (KX925554)
101321
101248
-
Lys
CTT
[ENA]
¡û
Identical group No.658343 (7 seq.)
>PHG0100449
DQ398053
Myoviridae
Mycobacterium phage Catera Brazil-1 (DQ398053)
92721
92793
+
Lys
CTT
[ENA]
¡û
>PHG181001543
KT321476
Myoviridae
Mycobacterium phage Zeenon (KT321476)
94383
94455
+
Lys
CTT
[ENA]
¡û
>PHG181003505
KX721255
Myoviridae
Mycobacterium phage Yucca (KX721255)
94297
94369
+
Lys
CTT
[ENA]
¡û
>PHG14100205
GQ303260
Myoviridae
Mycobacterium phage ET08 ATCC 35860-B1 (GQ303260)
93532
93604
+
Lys
CTT
[ENA]
¡û
>PHG14101073
JN204348
Myoviridae
Mycobacterium phage Sebata (JN204348)
95597
95669
+
Lys
CTT
[ENA]
¡û
>PHG14101145
JN412588
Myoviridae
Mycobacterium phage Dandelion (JN412588)
97896
97968
+
Lys
CTT
[ENA]
¡û
>PHG14101165
JN412592
Myoviridae
Mycobacterium phage LinStu Patience (JN412592)
94391
94463
+
Lys
CTT
[ENA]
¡û
Identical group No.669947 (29 seq.)
>PHG0100217
AY129337
Myoviridae
Mycobacterium phage Bxz1 PaP3 (AY129337)
96840
96912
+
Lys
CTT
[ENA]
¡û
>PHG0100535
EU826467
Myoviridae
Mycobacterium phage Rizal N4 (EU826467)
92462
92534
+
Lys
CTT
[ENA]
¡û
>PHG0100555
EU826468
Myoviridae
Mycobacterium phage Spud N4 (EU826468)
94599
94671
+
Lys
CTT
[ENA]
¡û
>PHG0100575
EU826469
Myoviridae
Mycobacterium phage ScottMcG N4 (EU826469)
93483
93555
+
Lys
CTT
[ENA]
¡û
>PHG181001230
KR080196
Myoviridae
Mycobacterium phage Momo (KR080196)
93385
93457
+
Lys
CTT
[ENA]
¡û
>PHG181001622
KT365398
Myoviridae
Mycobacterium phage DTDevon (KT365398)
95909
95981
+
Lys
CTT
[ENA]
¡û
>PHG181001643
KT365400
Myoviridae
Mycobacterium phage ErnieJ (KT365400)
93111
93183
+
Lys
CTT
[ENA]
¡û
>PHG181003190
KX369583
Myoviridae
Mycobacterium phage Littleton (KX369583)
94545
94617
+
Lys
CTT
[ENA]
¡û
>PHG181003531
KX721256
Myoviridae
Mycobacterium phage Erdmann (KX721256)
95152
95224
+
Lys
CTT
[ENA]
¡û
>PHG181003593
KX781992
Myoviridae
Mycobacterium phage Gabriel (KX781992)
93402
93474
+
Lys
CTT
[ENA]
¡û
>PHG181006176
MF919493
Myoviridae
Mycobacterium phage Audrick (MF919493)
94067
94139
+
Lys
CTT
[ENA]
¡û
>PHG181006245
MF919499
Myoviridae
Mycobacterium phage Daffodil (MF919499)
94484
94556
+
Lys
CTT
[ENA]
¡û
>PHG181007351
MG812494
Myoviridae
Mycobacterium phage Pier (MG812494)
96648
96720
+
Lys
CTT
[ENA]
¡û
>PHG181007637
MH051260
Myoviridae
Mycobacterium phage InterFolia (MH051260)
96401
96473
+
Lys
CTT
[ENA]
¡û
>PHG181007682
MH051266
Myoviridae
Mycobacterium phage MikeLiesIn (MH051266)
95367
95439
+
Lys
CTT
[ENA]
¡û
>PHG181007987
MH316567
Myoviridae
Mycobacterium phage ParkTD (MH316567)
94481
94553
+
Lys
CTT
[ENA]
¡û
>PHG14100889
JF704096
Myoviridae
Mycobacterium phage Ghost MB56Spyo045 (JF704096)
94088
94160
+
Lys
CTT
[ENA]
¡û
>PHG14100937
JF704116
Myoviridae
Mycobacterium phage Drazdys (JF704116)
94452
94524
+
Lys
CTT
[ENA]
¡û
>PHG14101195
JN624850
Myoviridae
Mycobacterium phage Pleione (JN624850)
94612
94684
+
Lys
CTT
[ENA]
¡û
>PHG14101243
JN699013
Myoviridae
Mycobacterium phage Pio ThreeOh3D2 (JN699013)
97496
97568
+
Lys
CTT
[ENA]
¡û
>PHG14101265
JN699625
Myoviridae
Mycobacterium phage Wally ThreeOh3D2 (JN699625)
93579
93651
+
Lys
CTT
[ENA]
¡û
>PHG14101286
JN699626
Myoviridae
Mycobacterium phage MoMoMixon (JN699626)
93938
94010
+
Lys
CTT
[ENA]
¡û
>PHG14101602
JQ911768
Myoviridae
Mycobacterium phage Ava3 Lu11 (JQ911768)
93916
93988
+
Lys
CTT
[ENA]
¡û
>PHG14102217
KC691257
Myoviridae
Mycobacterium phage Astraea Gb1 (KC691257)
93475
93547
+
Lys
CTT
[ENA]
¡û
>PHG14102238
KC748968
Myoviridae
Mycobacterium phage Gizmo Gb1 (KC748968)
96078
96150
+
Lys
CTT
[ENA]
¡û
>PHG14102262
KC748970
Myoviridae
Mycobacterium phage ArcherS7 Gb1 (KC748970)
94415
94487
+
Lys
CTT
[ENA]
¡û
>PHG14102446
KF006817
Myoviridae
Mycobacterium phage Breeniome phi47:1 (KF006817)
93428
93500
+
Lys
CTT
[ENA]
¡û
>PHG14102992
KJ595575
Myoviridae
Mycobacterium phage Willis LMSP-25 (KJ595575)
94380
94452
+
Lys
CTT
[ENA]
¡û
>PHG14103354
KM881426
Myoviridae
Mycobacterium phage ZygoTaiga pEcSw (KM881426)
95400
95472
+
Lys
CTT
[ENA]
¡û
Identical group No.725991 (1 seq.)
>PHG181006702
MG250486
Myoviridae
Raoultella phage Ro1 (MG250486)
79512
79586
+
Lys
CTT
[ENA]
¡û
Identical group No.731949 (1 seq.)
>PHG181003555
KX752698
Myoviridae
Mycobacterium phage Tonenili (KX752698)
98821
98893
+
Lys
CTT
[ENA]
¡û
Identical group No.802046 (1 seq.)
>PHG181005992
MF668280
Myoviridae
Mycobacterium phage Phabba (MF668280)
92436
92507
+
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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