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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Nanoarchaeota
Anticodon = CAT
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.255393 (4 seq.)
>A171005774
CP010514
Nanoarchaeota
Candidatus Nanopusillus acidilobi 7A [CP010514]
380187
380111
-
Met
CAT
-
¡û
>WENV181228740
OFEH01002369
[OFEH] hypersaline lake metagenome; Grendel Spring, Yellowstone National Park, Wyoming, USA
2
78
+
fMet
CAT
[ENA]
¢þ
>WENV181228801
OFEH01007161
[OFEH] hypersaline lake metagenome; Grendel Spring, Yellowstone National Park, Wyoming, USA
2
78
+
fMet
CAT
[ENA]
¢þ
>WENV181407034
OGCG01004613
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
4263
4339
+
fMet
CAT
[ENA]
¢þ
Identical group No.266710 (1 seq.)
>CA_fS100005
AE017199
Nanoarchaeota
Nanoarchaeum equitans Kin4-M [AE017199]
3254
35287
+
Met
CAT
[Ensembl]
¡û
Identical group No.574232 (1 seq.)
>A178000518
CP010514
Nanoarchaeota
Candidatus Nanopusillus acidilobi 7A [CP010514]
264079
263979
-
Met
CAT
-
¡û
Identical group No.629533 (1 seq.)
>At2120
AE017199
Nanoarchaeota
Nanoarchaeum equitans Kin4-M [AE017199]
327362
327500
+
Met
CAT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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