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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Nanoarchaeota
Anticodon = CTT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.556826 (5 seq.)
>A171005753
CP010514
Nanoarchaeota
Candidatus Nanopusillus acidilobi 7A [CP010514]
118165
118239
+
Lys
CTT
-
¡û
>WENV181228689
OFEH01001161
[OFEH] hypersaline lake metagenome; Grendel Spring, Yellowstone National Park, Wyoming, USA
4396
4322
-
Lys
CTT
[ENA]
¢þ
>WENV181407389
OGCG01022643
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
94
20
-
Lys
CTT
[ENA]
¢þ
>W1911654419
QEFH01000006
Nanoarchaeota
Candidatus Nanobsidianus stetteri [QEFH]
11592
11666
+
Lys
CTT
[ENA]
¡û
>W1911654501
QEFP01000003
Nanoarchaeota
Candidatus Nanobsidianus stetteri [QEFP]
1336
1262
-
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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