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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Nanoarchaeota
Anticodon = GAG
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.126937 (2 seq.)
>At2124
AE017199
Nanoarchaeota
Nanoarchaeum equitans Kin4-M [AE017199]
476845
476928
+
Leu
GAG
[Ensembl]
¡û
>W1610000094
AACL01000001
Nanoarchaeota
Nanoarchaeum equitans Kin4-M [AACL]
476845
476931
+
Leu
GAG
[ENA]
¡û
Identical group No.137086 (1 seq.)
>A171005772
CP010514
Nanoarchaeota
Candidatus Nanopusillus acidilobi 7A [CP010514]
384932
384849
-
Leu
GAG
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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