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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Nanoarchaeota
Anticodon = GCA
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.288134 (7 seq.)
>A171005781
CP010514
Nanoarchaeota
Candidatus Nanopusillus acidilobi 7A [CP010514]
282778
282705
-
Cys
GCA
-
¡û
>WENV181228758
OFEH01003121
[OFEH] hypersaline lake metagenome; Grendel Spring, Yellowstone National Park, Wyoming, USA
1485
1412
-
Cys
GCA
[ENA]
¢þ
>WENV181229215
OFEJ01001683
[OFEJ] sediment metagenome; Joseph's Coat, Yellowstone National Park, Wyoming, USA
5038
4965
-
Cys
GCA
[ENA]
¢þ
>WENV170668470
LAFJ01010629
[LAFJ] hot springs metagenome; hot springs water enriched for viruses sample NL10_1401_vDNA_Ovation_1.4g/mL
239
166
-
Cys
GCA
[ENA]
¢þ
>WENV170668507
LAFT01001520
[LAFT] hot springs metagenome; hot springs water enriched for viruses sample NL10_1401_vDNA_Ovation_1.3g/mL
354
427
+
Cys
GCA
[ENA]
¢þ
>W1911654437
QEFH01000035
Nanoarchaeota
Candidatus Nanobsidianus stetteri [QEFH]
1352
1279
-
Cys
GCA
[ENA]
¡û
>W1911654498
QEFP01000002
Nanoarchaeota
Candidatus Nanobsidianus stetteri [QEFP]
40482
40409
-
Cys
GCA
[ENA]
¡û
Identical group No.338069 (2 seq.)
>At2109
AE017199
Nanoarchaeota
Nanoarchaeum equitans Kin4-M [AE017199]
54744
54817
+
Cys
GCA
[Ensembl]
¡û
>W1610000082
AACL01000001
Nanoarchaeota
Nanoarchaeum equitans Kin4-M [AACL]
54744
54817
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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