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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Nanoarchaeota
Anticodon = GGC
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.697554 (2 seq.)
>At2139
AE017199
Nanoarchaeota
Nanoarchaeum equitans Kin4-M [AE017199]
259301
259230
-
Ala
GGC
[Ensembl]
¡û
>W1610000102
AACL01000001
Nanoarchaeota
Nanoarchaeum equitans Kin4-M [AACL]
259301
259227
-
Ala
GGC
[ENA]
¡û
Identical group No.727447 (2 seq.)
>A173000247
CP010514
Nanoarchaeota
Candidatus Nanopusillus acidilobi 7A [CP010514]
487321
487394
+
Ala
GGC
-
¡û
>W1930037210
QEFH01000005
Nanoarchaeota
Candidatus Nanobsidianus stetteri [QEFH]
9965
10038
+
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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