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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Nanoarchaeota
Anticodon = GGG
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.288132 (4 seq.)
>A171005785
CP010514
Nanoarchaeota
Candidatus Nanopusillus acidilobi 7A [CP010514]
61487
61412
-
Pro
GGG
-
¡û
>WENV181228706
OFEH01001376
[OFEH] hypersaline lake metagenome; Grendel Spring, Yellowstone National Park, Wyoming, USA
177
102
-
Pro
GGG
[ENA]
¢þ
>WENV181229213
OFEJ01001646
[OFEJ] sediment metagenome; Joseph's Coat, Yellowstone National Park, Wyoming, USA
3640
3715
+
Pro
GGG
[ENA]
¢þ
>WENV181229343
OFEJ01005239
[OFEJ] sediment metagenome; Joseph's Coat, Yellowstone National Park, Wyoming, USA
2074
1998
-
Pro
GGG
[ENA]
¢þ
Identical group No.338076 (2 seq.)
>At2133
AE017199
Nanoarchaeota
Nanoarchaeum equitans Kin4-M [AE017199]
135353
135280
-
Pro
GGG
[Ensembl]
¡û
>W1610000108
AACL01000001
Nanoarchaeota
Nanoarchaeum equitans Kin4-M [AACL]
135354
135279
-
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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