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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Nanoarchaeota
Anticodon = GTC
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.526067 (2 seq.)
>At2116
AE017199
Nanoarchaeota
Nanoarchaeum equitans Kin4-M [AE017199]
259125
259197
+
Asp
GTC
[Ensembl]
¡û
>W1610000087
AACL01000001
Nanoarchaeota
Nanoarchaeum equitans Kin4-M [AACL]
259125
259197
+
Asp
GTC
[ENA]
¡û
Identical group No.784157 (6 seq.)
>A171005778
CP010514
Nanoarchaeota
Candidatus Nanopusillus acidilobi 7A [CP010514]
348546
348476
-
Asp
GTC
-
¡û
>WENV181228754
OFEH01002982
[OFEH] hypersaline lake metagenome; Grendel Spring, Yellowstone National Park, Wyoming, USA
922
852
-
Asp
GTC
[ENA]
¢þ
>WENV181229357
OFEJ01005967
[OFEJ] sediment metagenome; Joseph's Coat, Yellowstone National Park, Wyoming, USA
1251
1181
-
Asp
GTC
[ENA]
¢þ
>WENV181404367
OGCA01000936
[OGCA] hot springs metagenome; Conch Spring, Yellowstone National Park, Wyoming, USA
2150
2080
-
Asp
GTC
[ENA]
¢þ
>W1911654434
QEFH01000026
Nanoarchaeota
Candidatus Nanobsidianus stetteri [QEFH]
3403
3333
-
Asp
GTC
[ENA]
¡û
>W1610018035
APJZ01000005
Nanoarchaeota
Candidatus Nanobsidianus stetteri Nst1 [APJZ]
56881
56811
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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