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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Nanoarchaeota
Anticodon = TAC
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.507712 (4 seq.)
>A171005760
CP010514
Nanoarchaeota
Candidatus Nanopusillus acidilobi 7A [CP010514]
424380
424452
+
Val
TAC
-
¡û
>WENV181405144
OGCB01016491
[OGCB] hot springs metagenome; Octopus Spring Streamers, Yellowstone National Park, Wyoming, USA
503
431
-
Val
TAC
[ENA]
¢þ
>W1610018017
APJZ01000002
Nanoarchaeota
Candidatus Nanobsidianus stetteri Nst1 [APJZ]
192135
192063
-
Val
TAC
[ENA]
¡û
>W1610018026
APJZ01000003
Nanoarchaeota
Candidatus Nanobsidianus stetteri Nst1 [APJZ]
70846
70918
+
Val
TAC
[ENA]
¡û
Identical group No.697556 (2 seq.)
>At2135
AE017199
Nanoarchaeota
Nanoarchaeum equitans Kin4-M [AE017199]
164240
164169
-
Val
TAC
[Ensembl]
¡û
>W1610000106
AACL01000001
Nanoarchaeota
Nanoarchaeum equitans Kin4-M [AACL]
164241
164168
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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