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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Nanoarchaeota
Anticodon = TCG
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.255424 (6 seq.)
>A171005773
CP010514
Nanoarchaeota
Candidatus Nanopusillus acidilobi 7A [CP010514]
382489
382415
-
Arg
TCG
-
¡û
>WENV181228823
OFEH01010401
[OFEH] hypersaline lake metagenome; Grendel Spring, Yellowstone National Park, Wyoming, USA
439
365
-
Arg
TCG
[ENA]
¢þ
>WENV181404529
OGCA01010164
[OGCA] hot springs metagenome; Conch Spring, Yellowstone National Park, Wyoming, USA
498
573
+
Arg
TCG
[ENA]
¢þ
>WENV181407233
OGCG01011195
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
88
14
-
Arg
TCG
[ENA]
¢þ
>W1911654429
QEFH01000018
Nanoarchaeota
Candidatus Nanobsidianus stetteri [QEFH]
6864
6790
-
Arg
TCG
[ENA]
¡û
>W1911654494
QEFP01000001
Nanoarchaeota
Candidatus Nanobsidianus stetteri [QEFP]
22656
22582
-
Arg
TCG
[ENA]
¡û
Identical group No.338073 (2 seq.)
>At2140
AE017199
Nanoarchaeota
Nanoarchaeum equitans Kin4-M [AE017199]
260652
260579
-
Arg
TCG
[Ensembl]
¡û
>W1610000101
AACL01000001
Nanoarchaeota
Nanoarchaeum equitans Kin4-M [AACL]
260653
260578
-
Arg
TCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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