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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Nanoarchaeota
Anticodon = TTC
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.242947 (6 seq.)
>A171005776
CP010514
Nanoarchaeota
Candidatus Nanopusillus acidilobi 7A [CP010514]
354901
354827
-
Glu
TTC
-
¡û
>WENV181229387
OFEJ01007705
[OFEJ] sediment metagenome; Joseph's Coat, Yellowstone National Park, Wyoming, USA
1882
1956
+
Glu
TTC
[ENA]
¢þ
>WENV181406721
OGCG01001052
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
3936
3862
-
Glu
TTC
[ENA]
¢þ
>WENV170668473
LAFJ01016388
[LAFJ] hot springs metagenome; hot springs water enriched for viruses sample NL10_1401_vDNA_Ovation_1.4g/mL
210
286
+
Glu
TTC
[ENA]
¢þ
>WENV170668517
LAFT01004644
[LAFT] hot springs metagenome; hot springs water enriched for viruses sample NL10_1401_vDNA_Ovation_1.3g/mL
579
503
-
Glu
TTC
[ENA]
¢þ
>W1610018031
APJZ01000003
Nanoarchaeota
Candidatus Nanobsidianus stetteri Nst1 [APJZ]
3988
3914
-
Glu
TTC
[ENA]
¡û
Identical group No.431114 (1 seq.)
>CA_fS100002
AE017199
Nanoarchaeota
Nanoarchaeum equitans Kin4-M [AE017199]
436635
487064
+
Glu
TTC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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