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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Nanoarchaeota
Anticodon = TTT
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.288164 (5 seq.)
>A171005779
CP010514
Nanoarchaeota
Candidatus Nanopusillus acidilobi 7A [CP010514]
336675
336600
-
Lys
TTT
-
¡û
>WENV181229432
OFEJ01011926
[OFEJ] sediment metagenome; Joseph's Coat, Yellowstone National Park, Wyoming, USA
1005
930
-
Lys
TTT
[ENA]
¢þ
>WENV181404875
OGCB01001030
[OGCB] hot springs metagenome; Octopus Spring Streamers, Yellowstone National Park, Wyoming, USA
1208
1283
+
Lys
TTT
[ENA]
¢þ
>WENV181405502
OGCE01000207
[OGCE] hot springs metagenome; Octopus Spring, Yellowstone National Park, Wyoming, USA
2462
2387
-
Lys
TTT
[ENA]
¢þ
>W1911654438
QEFH01000041
Nanoarchaeota
Candidatus Nanobsidianus stetteri [QEFH]
1209
1134
-
Lys
TTT
[ENA]
¡û
Identical group No.338075 (2 seq.)
>At2134
AE017199
Nanoarchaeota
Nanoarchaeum equitans Kin4-M [AE017199]
138297
138224
-
Lys
TTT
[Ensembl]
¡û
>W1610000107
AACL01000001
Nanoarchaeota
Nanoarchaeum equitans Kin4-M [AACL]
138297
138221
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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