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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Nitrososphaerota
Anticodon = CGG
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.293668 (11 seq.)
>A171006060
CP011097
Nitrososphaerota
Candidatus Nitrosotenuis cloacae SAT1 [CP011097]
322660
322586
-
Pro
CGG
-
¡û
>WENV180258309
OBEQ010995339
[OBEQ] groundwater metagenome; groundwater
81
7
-
Pro
CGG
[ENA]
¢þ
>WENV180352987
OBLQ010478620
[OBLQ] soil metagenome; soil
281
354
+
Pro
CGG
[ENA]
¢þ
>WENV183726213
PJQF01121232
[PJQF] biofilm metagenome; biomolecule (vanillin) treated reverse osmosis membrane biofilm
252
178
-
Pro
CGG
[ENA]
¢þ
>WENV170566001
FKKE01003836
[FKKE] freshwater metagenome; freshwater
4344
4418
+
Pro
CGG
[ENA]
¢þ
>WENV170566574
FKKE01051517
[FKKE] freshwater metagenome; freshwater
632
558
-
Pro
CGG
[ENA]
¢þ
>WENV170661245
JXWU01141036
[JXWU] soil metagenome; rice field; organic control Plot
227
300
+
Pro
CGG
[ENA]
¢þ
>W1910794323
MRWN01000051
Nitrososphaerota
Thaumarchaeota archaeon BIN5 [MRWN]
827
901
+
Pro
CGG
[ENA]
¡û
>WENV006288
AACY020171137
Marine microbial communities from Global Ocean Sampling (GOS)
242
320
+
Pro
CGG
[ENA]
>W1610027654
AVSQ01000002
Nitrososphaerota
Candidatus Nitrosotenuis chungbukensis MY2 [AVSQ]
82764
82839
+
Pro
CGG
[ENA]
¡û
>W1610083086
CBTY010000006
Nitrososphaerota
Candidatus Nitrosotenuis uzonensis N4 [CBTY]
181603
181529
-
Pro
CGG
[ENA]
¡û
Identical group No.301907 (3 seq.)
>A171006397
CP012850
Nitrososphaerota
Candidatus Nitrosocosmicus oleophilus MY3 [CP012850]
888043
887970
-
Pro
CGG
-
¡û
>A171006837
CP017922
Nitrososphaerota
Candidatus Nitrosocosmicus hydrocola G61 [CP017922]
2840650
2840723
+
Pro
CGG
-
¡û
>WENV180327650
OBKT01341722
[OBKT] soil metagenome; soil
176
103
-
Pro
CGG
[ENA]
¢þ
Identical group No.310027 (4 seq.)
>A171001913
CP002408
Nitrososphaerota
Candidatus Nitrososphaera gargensis Ga9.2 [CP002408]
1154434
1154361
-
Pro
CGG
-
¡û
>A171004254
CP007174
Nitrososphaerota
Candidatus Nitrososphaera evergladensis SR1 [CP007174]
1722595
1722671
+
Pro
CGG
-
¡û
>A171004326
CP007536
Nitrososphaerota
Nitrososphaera viennensis EN76 [CP007536]
603058
603134
+
Pro
CGG
-
¡û
>WENV180691255
OCZS010086191
[OCZS] soil metagenome; soil
989
1064
+
Pro
CGG
[ENA]
¢þ
Identical group No.337303 (4 seq.)
>A171007476
LN890280
Nitrososphaerota
Candidatus Nitrosotalea devanaterra [LN890280]
1584895
1584968
+
Pro
CGG
-
¡û
>WENV181144622
OEHO01049475
[OEHO] metagenome; unknown
138
211
+
Pro
CGG
[ENA]
¢þ
>W1910285431
FRFC01000003
Nitrososphaerota
Candidatus Nitrosotalea sinensis Nd2 [FRFC]
289739
289666
-
Pro
CGG
[ENA]
¡û
>W1910402085
FUYK01000010
Nitrososphaerota
Candidatus Nitrosotalea bavarica SbT1 [FUYK]
22866
22939
+
Pro
CGG
[ENA]
¡û
Identical group No.398592 (4 seq.)
>At0070
DP000238
Nitrososphaerota
Cenarchaeum symbiosum [DP000238]
1706771
1706844
+
Pro
CGG
[Ensembl]
¡û
>ENV004189
DQ397615
Environmental sample from ENV division of INSDC
7356
7432
+
Pro
CGG
[ENA]
>ENV004200
DQ397638
Environmental sample from ENV division of INSDC
11653
11577
-
Pro
CGG
[ENA]
>ENV004240
DQ397865
Environmental sample from ENV division of INSDC
24228
24150
-
Pro
CGG
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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