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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Nitrososphaerota
Anticodon = GAC
HIT:
11 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.244866 (4 seq.)
>A171006390
CP012850
Nitrososphaerota
Candidatus Nitrosocosmicus oleophilus MY3 [CP012850]
3173082
3173156
+
Val
GAC
-
¡û
>A171006844
CP017922
Nitrososphaerota
Candidatus Nitrosocosmicus hydrocola G61 [CP017922]
1060792
1060718
-
Val
GAC
-
¡û
>WENV180038889
LLBY010010768
[LLBY] soil metagenome; soil from tomato rhizosphere
24818
24892
+
Val
GAC
[ENA]
¢þ
>WENV180690142
OCZS010000030
[OCZS] soil metagenome; soil
2670
2595
-
Val
GAC
[ENA]
¢þ
Identical group No.245826 (3 seq.)
>A171001909
CP002408
Nitrososphaerota
Candidatus Nitrososphaera gargensis Ga9.2 [CP002408]
1927785
1927710
-
Val
GAC
-
¡û
>WENV180041899
LLBZ010672666
[LLBZ] soil metagenome; soil from tomato rhizosphere
44
119
+
Val
GAC
[ENA]
¢þ
>WENV180291363
OBIV01045389
[OBIV] soil metagenome; Clay
531
456
-
Val
GAC
[ENA]
¢þ
Identical group No.252548 (6 seq.)
>A173000172
CP007026
Nitrososphaerota
Candidatus Nitrosopelagicus brevis CN25 [CP007026]
1191826
1191751
-
Val
GAC
-
¡û
>W1930011849
LXWN01000002
Nitrososphaerota
Candidatus Nitrosopelagicus brevis brevis U25 [LXWN]
119881
119806
-
Val
GAC
[ENA]
¡û
>W1630018155
LUOY01000247
Nitrososphaerota
Nitrosopelagicus sp. REDSEA-S19_B12N3 [LUOY]
1208
1283
+
Val
GAC
[ENA]
¡û
>W1630018165
LUOZ01000114
Nitrososphaerota
Nitrosopelagicus sp. REDSEA-S25_B3 [LUOZ]
3503
3428
-
Val
GAC
[ENA]
¡û
>W1630018177
LUPB01000075
Nitrososphaerota
Nitrosopelagicus sp. REDSEA-S31_B2 [LUPB]
14093
14018
-
Val
GAC
[ENA]
¡û
>W1630018183
LUPD01000055
Nitrososphaerota
Nitrosopelagicus sp. REDSEA-S37_B6 [LUPD]
6295
6220
-
Val
GAC
[ENA]
¡û
Identical group No.261129 (1 seq.)
>A171007479
LN890280
Nitrososphaerota
Candidatus Nitrosotalea devanaterra [LN890280]
1773722
1773646
-
Val
GAC
-
¡û
Identical group No.266442 (1 seq.)
>A173000341
CP021324
Nitrososphaerota
Candidatus Nitrosomarinus catalina SPOT01 [CP021324]
1312311
1312236
-
Val
GAC
-
¡û
Identical group No.300090 (10 seq.)
>A173000007
CP000866
Nitrososphaerota
Nitrosopumilus maritimus SCM1 [CP000866]
1591588
1591514
-
Val
GAC
-
¡û
>A173000115
CP003842
Nitrososphaerota
Candidatus Nitrosopumilus koreensis AR1 [CP003842]
1540105
1540031
-
Val
GAC
-
¡û
>A173000257
CP010868
Nitrososphaerota
Nitrosopumilus piranensis D3C [CP010868]
182713
182639
-
Val
GAC
-
¡û
>W1930009770
JNVL01000005
Nitrososphaerota
Marine Group I thaumarchaeote SCGC AAA799-E16 [JNVL]
37567
37493
-
Val
GAC
[ENA]
¡û
>W1930009785
JOSY01000074
Nitrososphaerota
Marine Group I thaumarchaeote SCGC AAA799-D11 [JOSY]
48792
48718
-
Val
GAC
[ENA]
¡û
>W1930009804
JOTD01000085
Nitrososphaerota
Marine Group I thaumarchaeote SCGC RSA3 [JOTD]
48650
48576
-
Val
GAC
[ENA]
¡û
>W1630000063
ABEO01000001
Nitrososphaerota
Nitrosopumilus maritimus maritimus SCM1 [ABEO]
852205
852131
-
Val
GAC
[ENA]
¡û
>W1630000363
AJVI01000003
Nitrososphaerota
Nitrosopumilus sp. SJ [AJVI]
93574
93500
-
Val
GAC
[ENA]
¡û
>W1630000373
AJVJ01000012
Nitrososphaerota
Nitrosopumilus sp. AR [AJVJ]
93571
93497
-
Val
GAC
[ENA]
¡û
>W1630010235
LFEY01000014
Nitrososphaerota
Thaumarchaeota archaeon casp-thauma3 [LFEY]
52073
51999
-
Val
GAC
[ENA]
¡û
Identical group No.320929 (2 seq.)
>A173000123
CP003843
Nitrososphaerota
Candidatus Nitrosopumilus sediminis AR2 [CP003843]
1558799
1558725
-
Val
GAC
-
¡û
>W1630000381
AJVJ01000043
Nitrososphaerota
Nitrosopumilus sp. AR [AJVJ]
25300
25226
-
Val
GAC
[ENA]
¡û
Identical group No.360686 (4 seq.)
>A173000258
CP011070
Nitrososphaerota
Nitrosopumilus adriaticus NF5 [CP011070]
118101
118175
+
Val
GAC
-
¡û
>W1930002155
BGKI01000010
Nitrososphaerota
Nitrosopumilus zosterae sp. NM25 [BGKI]
101281
101206
-
Val
GAC
[ENA]
¡û
>W1630001049
AXWL01000030
Nitrososphaerota
Thaumarchaeota archaeon SCGC AAA282-K18 [AXWL]
755
829
+
Val
GAC
[ENA]
¡û
>W1630010760
LGTD01001130
Nitrososphaerota
Candidatus Nitrosopumilus sp. DDS1 [LGTD]
1120
1046
-
Val
GAC
[ENA]
¡û
Identical group No.391891 (2 seq.)
>A171004248
CP007174
Nitrososphaerota
Candidatus Nitrososphaera evergladensis SR1 [CP007174]
720241
720315
+
Val
GAC
-
¡û
>A171004333
CP007536
Nitrososphaerota
Nitrososphaera viennensis EN76 [CP007536]
1315965
1315891
-
Val
GAC
-
¡û
Identical group No.440193 (2 seq.)
>A173000267
CP011097
Nitrososphaerota
Candidatus Nitrosotenuis cloacae SAT1 [CP011097]
1591185
1591261
+
Val
GAC
-
¡û
>W1630003654
CBTY010000011
Nitrososphaerota
Candidatus Nitrosotenuis uzonensis N4 [CBTY]
165703
165627
-
Val
GAC
[ENA]
¡û
Identical group No.772325 (1 seq.)
>At0084
DP000238
Nitrososphaerota
Cenarchaeum symbiosum [DP000238]
1562474
1562400
-
Val
GAC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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