tRNA genes clustered and arranged according to each identical group

Nitrososphaerota

Anticodon = GCT

HIT: 10 Group(s).
Download Sequence Representative sequence of each cluster
View ClustalW result
Sort by Identical group No. Sort by the number of tRNAs in the Identical group
Select
 Sequence ID Genome ID
(or Accession No.)		 Phylum/Class
(Sample source for ENV)		 Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Identical group No.114915 (28 seq.)
>A171006016 CP011070 Nitrososphaerota Nitrosopumilus adriaticus NF5 [CP011070] 420588 420674 + Ser GCT - ¡û
>A171007054 CP021324 Nitrososphaerota Candidatus Nitrosomarinus catalina SPOT01 [CP021324] 311084 311170 + Ser GCT - ¡û
>WENV016601 AACY020466347 Marine microbial communities from Global Ocean Sampling (GOS) 1093 1181 + Ser GCT [ENA]
>WENV180049104 MPLU02034458 [MPLU] marine metagenome; 90 m water sample filtered on 0.2 um supor filter 105 19 - Ser GCT [ENA] ¢þ
>WENV180049351 MPLU02053111 [MPLU] marine metagenome; 90 m water sample filtered on 0.2 um supor filter 2471 2385 - Ser GCT [ENA] ¢þ
>WENV180059426 MPLX02112039 [MPLX] marine metagenome; 120 m water sample filtered on 0.2 um supor filter 696 782 + Ser GCT [ENA] ¢þ
>WENV180115458 OAPT01002675 [OAPT] marine metagenome; seawater 980 1066 + Ser GCT [ENA] ¢þ
>WENV180363360 OBNY01031797 [OBNY] marine metagenome; ENVO:00002010 161 75 - Ser GCT [ENA] ¢þ
>WENV180595103 OCPB01017495 [OCPB] marine metagenome; ENVO:00002149 130 44 - Ser GCT [ENA] ¢þ
>WENV181092382 OEBK01000073 [OEBK] marine metagenome; ENVO:00002010 for 'seawater 1066 1152 + Ser GCT [ENA] ¢þ
>WENV183800693 PVBE010609917 [PVBE] marine metagenome; water 4456 4370 - Ser GCT [ENA] ¢þ
>WENV170115109 CENF01407728 [CENF] marine metagenome genome assembly TARA_004_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 794 708 - Ser GCT [ENA] ¢þ
>WENV170148483 CENZ01379621 [CENZ] marine metagenome genome assembly TARA_025_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 829 915 + Ser GCT [ENA] ¢þ
>WENV170155143 CEOF01439098 [CEOF] marine metagenome genome assembly TARA_018_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 666 580 - Ser GCT [ENA] ¢þ
>WENV170170218 CEOP01412117 [CEOP] marine metagenome genome assembly TARA_009_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 478 564 + Ser GCT [ENA] ¢þ
>WENV170272047 CERK01033285 [CERK] marine metagenome genome assembly TARA_066_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 543 457 - Ser GCT [ENA] ¢þ
>WENV170286065 CERW01048314 [CERW] marine metagenome genome assembly TARA_066_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 1956 2042 + Ser GCT [ENA] ¢þ
>WENV170325144 CESS01200659 [CESS] marine metagenome genome assembly TARA_023_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 1284 1370 + Ser GCT [ENA] ¢þ
>WENV170480340 CEVL01090733 [CEVL] marine metagenome genome assembly TARA_146_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 232 146 - Ser GCT [ENA] ¢þ
>WENV170502855 CEVV01029904 [CEVV] marine metagenome genome assembly TARA_152_MIX_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 4793 4879 + Ser GCT [ENA] ¢þ
>WENV170505929 CEVW01117860 [CEVW] marine metagenome genome assembly TARA_149_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 286 372 + Ser GCT [ENA] ¢þ
>WENV170507190 CEVX01024439 [CEVX] marine metagenome genome assembly TARA_152_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 2576 2490 - Ser GCT [ENA] ¢þ
>WENV170617397 FUWD012924745 [FUWD] metagenome; unknown 420 334 - Ser GCT [ENA] ¢þ
>WENV170750166 LUMG01000645 [LUMG] marine metagenome; Red Sea water column Station 34 - depth 50m 484 570 + Ser GCT [ENA] ¢þ
>WENV170756657 LUMP01000419 [LUMP] marine metagenome; Red Sea water column Station 12 - depth 47m 5052 5138 + Ser GCT [ENA] ¢þ
>WENV170944743 MDUO01002362 [MDUO] marine metagenome; 30 m water sample from station 6 1296 1382 + Ser GCT [ENA] ¢þ
>W1610617244 LGTD01000180 Nitrososphaerota Candidatus Nitrosopumilus sp. DDS1 [LGTD] 4064 3978 - Ser GCT [ENA] ¡û
>W1610855519 LQMW01000017 Nitrososphaerota Nitrosopumilus sp. Nsub [LQMW] 123814 123728 - Ser GCT [ENA] ¡û
Identical group No.117469 (41 seq.)
>A171004100 CP007026 Nitrososphaerota Candidatus Nitrosopelagicus brevis CN25 [CP007026] 345528 345614 + Ser GCT - ¡û
>WENV180049794 MPLU02085066 [MPLU] marine metagenome; 90 m water sample filtered on 0.2 um supor filter 564 478 - Ser GCT [ENA] ¢þ
>WENV170123620 CENO01060027 [CENO] marine metagenome genome assembly TARA_033_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 3576 3490 - Ser GCT [ENA] ¢þ
>WENV170157301 CEOJ01050483 [CEOJ] marine metagenome genome assembly TARA_034_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 1993 2079 + Ser GCT [ENA] ¢þ
>WENV170189386 CEPB01205918 [CEPB] marine metagenome genome assembly TARA_057_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 757 843 + Ser GCT [ENA] ¢þ
>WENV170189785 CEPC01031382 [CEPC] marine metagenome genome assembly TARA_064_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 704 618 - Ser GCT [ENA] ¢þ
>WENV170252941 CEQU01039393 [CEQU] marine metagenome genome assembly TARA_076_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 232 146 - Ser GCT [ENA] ¢þ
>WENV170255606 CEQX01008640 [CEQX] marine metagenome genome assembly TARA_070_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 5318 5232 - Ser GCT [ENA] ¢þ
>WENV170271712 CERK01001185 [CERK] marine metagenome genome assembly TARA_066_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 1187 1101 - Ser GCT [ENA] ¢þ
>WENV170323204 CESR01304670 [CESR] marine metagenome genome assembly TARA_100_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 481 567 + Ser GCT [ENA] ¢þ
>WENV170410735 CEUJ01129515 [CEUJ] marine metagenome genome assembly TARA_125_MIX_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 233 319 + Ser GCT [ENA] ¢þ
>WENV170419260 CEUM01112374 [CEUM] marine metagenome genome assembly TARA_123_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 2225 2139 - Ser GCT [ENA] ¢þ
>WENV170467862 CEVE01288789 [CEVE] marine metagenome genome assembly TARA_124_SRF_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 1507 1421 - Ser GCT [ENA] ¢þ
>WENV170469198 CEVF01093490 [CEVF] marine metagenome genome assembly TARA_124_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 497 411 - Ser GCT [ENA] ¢þ
>WENV170488998 CEVP01035050 [CEVP] marine metagenome genome assembly TARA_150_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 121 207 + Ser GCT [ENA] ¢þ
>WENV170495885 CEVS01005920 [CEVS] marine metagenome genome assembly TARA_151_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 214 128 - Ser GCT [ENA] ¢þ
>WENV170498777 CEVT01071754 [CEVT] marine metagenome genome assembly TARA_150_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 166 80 - Ser GCT [ENA] ¢þ
>WENV170729966 LULG01005227 [LULG] marine metagenome; Red Sea water column Station 169 - depth 200m 996 1082 + Ser GCT [ENA] ¢þ
>WENV170730787 LULH01004426 [LULH] marine metagenome; Red Sea water column Station 169 - depth 100m 208 294 + Ser GCT [ENA] ¢þ
>WENV170736352 LULM01001445 [LULM] marine metagenome; Red Sea water column Station 149 - depth 200m 1162 1076 - Ser GCT [ENA] ¢þ
>WENV170736979 LULN01000450 [LULN] marine metagenome; Red Sea water column Station 149 - depth 100m 8533 8619 + Ser GCT [ENA] ¢þ
>WENV170741597 LULT01000230 [LULT] marine metagenome; Red Sea water column Station 108 - depth 100m 364 450 + Ser GCT [ENA] ¢þ
>WENV170746075 LULZ01007133 [LULZ] marine metagenome; Red Sea water column Station 91 - depth 100m 393 479 + Ser GCT [ENA] ¢þ
>WENV170747676 LUMD01000011 [LUMD] marine metagenome; Red Sea water column Station 34 - depth 258m 191 277 + Ser GCT [ENA] ¢þ
>WENV170748564 LUME01000007 [LUME] marine metagenome; Red Sea water column Station 34 - depth 200m 94364 94278 - Ser GCT [ENA] ¢þ
>WENV170751044 LUMH01013551 [LUMH] marine metagenome; Red Sea water column Station 34 - depth 25m 208 122 - Ser GCT [ENA] ¢þ
>WENV170753958 LUMK01020552 [LUMK] marine metagenome; Red Sea water column Station 22 - depth 200m 217 303 + Ser GCT [ENA] ¢þ
>WENV170754210 LUML01000829 [LUML] marine metagenome; Red Sea water column Station 22 - depth 10m 2521 2607 + Ser GCT [ENA] ¢þ
>WENV170756668 LUMP01000449 [LUMP] marine metagenome; Red Sea water column Station 12 - depth 47m 7449 7535 + Ser GCT [ENA] ¢þ
>WENV170759308 LUMS01011008 [LUMS] marine metagenome; Red Sea water column Station 192 - depth 25m 764 678 - Ser GCT [ENA] ¢þ
>WENV170760828 LUMU01000435 [LUMU] marine metagenome; Red Sea water column Station 192 - depth 100m 3626 3540 - Ser GCT [ENA] ¢þ
>WENV170761424 LUMV01000317 [LUMV] marine metagenome; Red Sea water column Station 192 - depth 200m 7172 7258 + Ser GCT [ENA] ¢þ
>W1910647543 LXWN01000002 Nitrososphaerota Candidatus Nitrosopelagicus brevis brevis U25 [LXWN] 506615 506701 + Ser GCT [ENA] ¡û
>WENV026164 AACY020945108 Marine microbial communities from Global Ocean Sampling (GOS) 708 794 + Ser GCT [ENA]
>WENV027025 AACY021013479 Marine microbial communities from Global Ocean Sampling (GOS) 328 242 - Ser GCT [ENA]
>WENV053018 AACY023068598 Marine microbial communities from Global Ocean Sampling (GOS) 145 231 + Ser GCT [ENA]
>WENV076023 AACY024069908 Marine microbial communities from Global Ocean Sampling (GOS) 198 112 - Ser GCT [ENA]
>W1610937674 LUOZ01000035 Nitrososphaerota Nitrosopelagicus sp. REDSEA-S25_B3 [LUOZ] 364 450 + Ser GCT [ENA] ¡û
>W1610937730 LUPB01000072 Nitrososphaerota Nitrosopelagicus sp. REDSEA-S31_B2 [LUPB] 8414 8500 + Ser GCT [ENA] ¡û
>W1610937756 LUPD01000018 Nitrososphaerota Nitrosopelagicus sp. REDSEA-S37_B6 [LUPD] 208 294 + Ser GCT [ENA] ¡û
>W1610937795 LUPE01000099 Nitrososphaerota Nitrosopelagicus sp. REDSEA-S43_B1 [LUPE] 3626 3540 - Ser GCT [ENA] ¡û
Identical group No.118563 (12 seq.)
>A171000247 CP000866 Nitrososphaerota Nitrosopumilus maritimus SCM1 [CP000866] 1263222 1263136 - Ser GCT - ¡û
>A171003403 CP003842 Nitrososphaerota Candidatus Nitrosopumilus koreensis AR1 [CP003842] 1274519 1274433 - Ser GCT - ¡û
>A171005924 CP010868 Nitrososphaerota Nitrosopumilus piranensis D3C [CP010868] 1604818 1604732 - Ser GCT - ¡û
>W1910572977 JNVL01000058 Nitrososphaerota Marine Group I thaumarchaeote SCGC AAA799-E16 [JNVL] 1965 2051 + Ser GCT [ENA] ¡û
>W1910572986 JOKN01000010 Nitrososphaerota Marine Group I thaumarchaeote SCGC AAA799-N04 [JOKN] 17544 17458 - Ser GCT [ENA] ¡û
>W1910573218 JOSY01000055 Nitrososphaerota Marine Group I thaumarchaeote SCGC AAA799-D11 [JOSY] 3743 3657 - Ser GCT [ENA] ¡û
>W1910573255 JOTA01000018 Nitrososphaerota Marine Group I thaumarchaeote SCGC AAA799-B03 [JOTA] 11783 11869 + Ser GCT [ENA] ¡û
>W1910573311 JOTD01000068 Nitrososphaerota Marine Group I thaumarchaeote SCGC RSA3 [JOTD] 3787 3701 - Ser GCT [ENA] ¡û
>WENV027855 AACY021077482 Marine microbial communities from Global Ocean Sampling (GOS) 482 394 - Ser GCT [ENA]
>W1610000548 ABEO01000001 Nitrososphaerota Nitrosopumilus maritimus maritimus SCM1 [ABEO] 523838 523752 - Ser GCT [ENA] ¡û
>W1610005416 AJVI01000013 Nitrososphaerota Nitrosopumilus sp. SJ [AJVI] 15198 15112 - Ser GCT [ENA] ¡û
>W1610005444 AJVJ01000031 Nitrososphaerota Nitrosopumilus sp. AR [AJVJ] 75712 75626 - Ser GCT [ENA] ¡û
Identical group No.118645 (3 seq.)
>A171006387 CP012850 Nitrososphaerota Candidatus Nitrosocosmicus oleophilus MY3 [CP012850] 2445084 2445168 + Ser GCT - ¡û
>A171006841 CP017922 Nitrososphaerota Candidatus Nitrosocosmicus hydrocola G61 [CP017922] 1568831 1568747 - Ser GCT - ¡û
>WENV180583981 OCNM01002349 [OCNM] soil metagenome; soil 410 494 + Ser GCT [ENA] ¢þ
Identical group No.123208 (2 seq.)
>A171003426 CP003843 Nitrososphaerota Candidatus Nitrosopumilus sediminis AR2 [CP003843] 1262176 1262090 - Ser GCT - ¡û
>W1610005466 AJVJ01000051 Nitrososphaerota Nitrosopumilus sp. AR [AJVJ] 11815 11901 + Ser GCT [ENA] ¡û
Identical group No.129329 (10 seq.)
>A171007484 LN890280 Nitrososphaerota Candidatus Nitrosotalea devanaterra [LN890280] 1432247 1432163 - Ser GCT - ¡û
>WENV180254003 OBEQ010593546 [OBEQ] groundwater metagenome; groundwater 284 370 + Ser GCT [ENA] ¢þ
>WENV180254120 OBEQ010603686 [OBEQ] groundwater metagenome; groundwater 9042 9128 + Ser GCT [ENA] ¢þ
>WENV180255863 OBEQ010762701 [OBEQ] groundwater metagenome; groundwater 5313 5397 + Ser GCT [ENA] ¢þ
>WENV180257206 OBEQ010890630 [OBEQ] groundwater metagenome; groundwater 637 721 + Ser GCT [ENA] ¢þ
>WENV180351394 OBLQ010051732 [OBLQ] soil metagenome; soil 449 533 + Ser GCT [ENA] ¢þ
>WENV180584448 OCOJ01043000 [OCOJ] soil metagenome; soil 498 583 + Ser GCT [ENA] ¢þ
>W1910285429 FRFC01000003 Nitrososphaerota Candidatus Nitrosotalea sinensis Nd2 [FRFC] 474022 474106 + Ser GCT [ENA] ¡û
>W1910760459 MNGY01000053 Nitrososphaerota Thaumarchaeota archaeon 13_1_40CM_2_39_13_2 [MNGY] 2559 2475 - Ser GCT [ENA] ¡û
>W1910760505 MNJS01000041 Nitrososphaerota Thaumarchaeota archaeon 13_1_20CM_2_39_20 [MNJS] 2725 2641 - Ser GCT [ENA] ¡û
Identical group No.134668 (4 seq.)
>A171001908 CP002408 Nitrososphaerota Candidatus Nitrososphaera gargensis Ga9.2 [CP002408] 2282636 2282552 - Ser GCT - ¡û
>W1910760386 MNEV01000009 Nitrososphaerota Candidatus Nitrososphaera sp. 13_1_40CM_48_12 [MNEV] 7955 8041 + Ser GCT [ENA] ¡û
>W1910760395 MNFA01000055 Nitrososphaerota Thaumarchaeota archaeon 13_1_40CM_4_48_7 [MNFA] 3917 3831 - Ser GCT [ENA] ¡û
>W1910760416 MNFY01000202 Nitrososphaerota Thaumarchaeota archaeon 13_1_40CM_3_50_5 [MNFY] 3734 3648 - Ser GCT [ENA] ¡û
Identical group No.139390 (2 seq.)
>A171004251 CP007174 Nitrososphaerota Candidatus Nitrososphaera evergladensis SR1 [CP007174] 1058272 1058358 + Ser GCT - ¡û
>A171004331 CP007536 Nitrososphaerota Nitrososphaera viennensis EN76 [CP007536] 2486496 2486582 + Ser GCT - ¡û
Identical group No.140905 (3 seq.)
>At0052 DP000238 Nitrososphaerota Cenarchaeum symbiosum [DP000238] 40040 40126 + Ser GCT [Ensembl] ¡û
>ENV004172 DQ397586 Environmental sample from ENV division of INSDC 26822 26734 - Ser GCT [ENA]
>ENV004182 DQ397601 Environmental sample from ENV division of INSDC 3720 3632 - Ser GCT [ENA]
Identical group No.146734 (3 seq.)
>A171006046 CP011097 Nitrososphaerota Candidatus Nitrosotenuis cloacae SAT1 [CP011097] 465671 465755 + Ser GCT - ¡û
>W1610027677 AVSQ01000021 Nitrososphaerota Candidatus Nitrosotenuis chungbukensis MY2 [AVSQ] 109090 109004 - Ser GCT [ENA] ¡û
>W1610083096 CBTY010000009 Nitrososphaerota Candidatus Nitrosotenuis uzonensis N4 [CBTY] 192655 192569 - Ser GCT [ENA] ¡û
Select
 Sequence ID Genome ID
(or Accession No.)		 Phylum/Class
(Sample source for ENV)		 Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Download Sequence Representative sequence of each cluster
View ClustalW result

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