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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Olavius algarvensis microbiome from Mediterranean sea
Anticodon = CAG
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.121719 (5 seq.)
>WENV183516097
OMKS01130904
[OMKS] sediment metagenome; hot spring sediment
383
469
+
Leu
CAG
[ENA]
¢þ
>WENV170603422
FUWD010308819
[FUWD] metagenome; unknown
229
315
+
Leu
CAG
[ENA]
¢þ
>SRA1033241
SRR035088.204249
454 Sequencing (SRP001809)
98
12
-
Leu
CAG
[SRA]
>W1511336900
JRAS01000087
Spirochaetota
Alkalispirochaeta odontotermitis JC202 [JRAS]
12911
12825
-
Leu
CAG
[ENA]
¡û
>WENV079095
AASZ01000323
Olavius algarvensis microbiome from Mediterranean sea
12911
12999
+
Leu
CAG
[ENA]
Identical group No.150929 (1 seq.)
>WENV079075
AASZ01000058
Olavius algarvensis microbiome from Mediterranean sea
1762
1674
-
Leu
CAG
[ENA]
Identical group No.150935 (1 seq.)
>WENV079211
AASZ01005240
Olavius algarvensis microbiome from Mediterranean sea
807
719
-
Leu
CAG
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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