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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Olavius algarvensis microbiome from Mediterranean sea
Anticodon = CCC
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.511502 (33 seq.)
>W1710791176
LJNK01000029
Unclassified
Deltaproteobacteria bacterium SG8_13 [LJNK]
15075
15000
-
Gly
CCC
[ENA]
¡û
>W131208424
ATHJ01000091
Thermodesulfobacteriota
Desulfococcus multivorans DSM 2059 [ATHJ]
44508
44583
+
Gly
CCC
[ENA]
¡û
>W131224436
AUCU01000015
Thermodesulfobacteriota
Desulfatirhabdium butyrativorans DSM 18734 [AUCU]
94913
94988
+
Gly
CCC
[ENA]
¡û
>C171038057
CP015381
Thermodesulfobacteriota
Desulfococcus multivorans DSM 2059 [CP015381]
3984298
3984373
+
Gly
CCC
-
¡û
>C171100863
CP019913
Thermodesulfobacteriota
Desulfococcus multivorans DSM 2059 [CP019913]
3984535
3984610
+
Gly
CCC
-
¡û
>WENV180264698
OBEQ011594180
[OBEQ] groundwater metagenome; groundwater
1785
1860
+
Gly
CCC
[ENA]
¢þ
>WENV180311094
OBJT01111132
[OBJT] soil metagenome; soil
393
318
-
Gly
CCC
[ENA]
¢þ
>WENV180371014
OBOI01000082
[OBOI] sediment metagenome; sediment
17426
17501
+
Gly
CCC
[ENA]
¢þ
>WENV183709519
PDWI01029317
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
2923
2998
+
Gly
CCC
[ENA]
¢þ
>WENV183711578
PDWI01073587
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
90
15
-
Gly
CCC
[ENA]
¢þ
>WENV183712689
PDWI01110039
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
811
886
+
Gly
CCC
[ENA]
¢þ
>WENV183716002
PDWI01279349
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1362
1287
-
Gly
CCC
[ENA]
¢þ
>WENV183716386
PDWI01305241
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
990
1065
+
Gly
CCC
[ENA]
¢þ
>WENV183717807
PDWJ01001675
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
13648
13573
-
Gly
CCC
[ENA]
¢þ
>WENV183717866
PDWJ01001799
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
9484
9559
+
Gly
CCC
[ENA]
¢þ
>WENV183746881
PPCM01000030
[PPCM] marine sediment metagenome; marine sediment
298298
298223
-
Gly
CCC
[ENA]
¢þ
>WENV170006373
AMWB02018764
[AMWB] bioreactor metagenome; anode biofilm in microbial fuel cells
12953
12878
-
Gly
CCC
[ENA]
¢þ
>WENV170640565
JFJP01022256
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
1977
2052
+
Gly
CCC
[ENA]
¢þ
>WENV170640566
JFJP01022310
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
7687
7612
-
Gly
CCC
[ENA]
¢þ
>WENV170643399
JFJP01055356
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
3108
3033
-
Gly
CCC
[ENA]
¢þ
>WENV170694055
LGVD01008183
[LGVD] marine sediment metagenome; sample #3730, Push core (PC) 16 from cruise R/V Atlantis leg AT-15-68, Alvin dive 4635 at
1154
1229
+
Gly
CCC
[ENA]
¢þ
>WENV170698234
LGVF01292667
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
4521
4596
+
Gly
CCC
[ENA]
¢þ
>W1910441924
FWEV01000070
Thermodesulfobacteriota
Desulfamplus magnetovallimortis magnetomortis [FWEV]
5412
5487
+
Gly
CCC
[ENA]
¡û
>W1810084689
PESK01000028
Thermodesulfobacteriota
Desulfofaba hansenii P1 [PESK]
63143
63068
-
Gly
CCC
[ENA]
¡û
>W1510021762
BCAG01000006
Thermodesulfobacteriota
Desulfatitalea tepidiphila S28bF [BCAG]
390062
390137
+
Gly
CCC
[ENA]
¡û
>W1511336895
JRAS01000005
Spirochaetota
Alkalispirochaeta odontotermitis JC202 [JRAS]
8274
8349
+
Gly
CCC
[ENA]
¡û
>W1511564373
LADR01000049
Thermodesulfobacteriota
Desulfatitalea sp. BRH_c12 [LADR]
30860
30785
-
Gly
CCC
[ENA]
¡û
>W1610046083
BBCC01000001
Thermodesulfobacteriota
Desulfosarcina cetonica JCM 12296 [BBCC]
74706
74631
-
Gly
CCC
[ENA]
¡û
>W1610655101
LJNK01000029
Unclassified
Deltaproteobacteria bacterium SG8_13 [LJNK]
15075
15000
-
Gly
CCC
[ENA]
¡û
>WENV079093
AASZ01000286
Olavius algarvensis microbiome from Mediterranean sea
27756
27679
-
Gly
CCC
[ENA]
>W1710042879
BBCC01000001
Thermodesulfobacteriota
Desulfosarcina cetonica JCM 12296 [BBCC]
74706
74631
-
Gly
CCC
[ENA]
¡û
>W1710600531
FUWN01000004
Thermodesulfobacteriota
Desulfococcus multivorans DSM 2059 [FUWN]
44828
44903
+
Gly
CCC
[ENA]
¡û
>W1710606611
FWXY01000003
Thermodesulfobacteriota
Desulfocicer vacuolatum DSM 3385 [FWXY]
261914
261839
-
Gly
CCC
[ENA]
¡û
Identical group No.639735 (1 seq.)
>WENV079090
AASZ01000214
Olavius algarvensis microbiome from Mediterranean sea
33996
33921
-
Gly
CCC
[ENA]
Identical group No.833423 (1 seq.)
>WENV079198
AASZ01003752
Olavius algarvensis microbiome from Mediterranean sea
1482
1409
-
Gly
CCC
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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