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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Olavius algarvensis microbiome from Mediterranean sea
Anticodon = CGG
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.326085 (9 seq.)
>W131208411
ATHJ01000043
Thermodesulfobacteriota
Desulfococcus multivorans DSM 2059 [ATHJ]
24302
24226
-
Pro
CGG
[ENA]
¡û
>C171038079
CP015381
Thermodesulfobacteriota
Desulfococcus multivorans DSM 2059 [CP015381]
2521521
2521445
-
Pro
CGG
-
¡û
>C171100885
CP019913
Thermodesulfobacteriota
Desulfococcus multivorans DSM 2059 [CP019913]
2521756
2521680
-
Pro
CGG
-
¡û
>WENV180345738
OBLN01003826
[OBLN] sediment metagenome; sediment
892
968
+
Pro
CGG
[ENA]
¢þ
>WENV170006895
AMWB02062522
[AMWB] bioreactor metagenome; anode biofilm in microbial fuel cells
49430
49506
+
Pro
CGG
[ENA]
¢þ
>W1910067274
BEXT01000001
Thermodesulfobacteriota
Desulfonema ishimotonii Tokyo 01 [BEXT]
1325001
1325077
+
Pro
CGG
[ENA]
¡û
>SRA1032870
SRR035088.119729
454 Sequencing (SRP001809)
264
188
-
Pro
CGG
[SRA]
>WENV079183
AASZ01002935
Olavius algarvensis microbiome from Mediterranean sea
474
552
+
Pro
CGG
[ENA]
>W1710600527
FUWN01000003
Thermodesulfobacteriota
Desulfococcus multivorans DSM 2059 [FUWN]
328130
328054
-
Pro
CGG
[ENA]
¡û
Identical group No.406976 (3 seq.)
>W1910208720
FLUY01001144
Gammaproteobacteria
Candidatus Thiosymbion oneisti ectosymbiont of Laxus oneistus [FLUY]
1267
1343
+
Pro
CGG
[ENA]
¡û
>W1910208767
FLUZ01001380
Gammaproteobacteria
Candidatus Thiosymbion oneisti ectosymbiont of Laxus oneistus [FLUZ]
3554
3630
+
Pro
CGG
[ENA]
¡û
>WENV079204
AASZ01004535
Olavius algarvensis microbiome from Mediterranean sea
204
282
+
Pro
CGG
[ENA]
Identical group No.439475 (1 seq.)
>WENV079107
AASZ01000709
Olavius algarvensis microbiome from Mediterranean sea
10067
9989
-
Pro
CGG
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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