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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Olavius algarvensis microbiome from Mediterranean sea
Anticodon = CTC
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.602723 (3 seq.)
>W1910208709
FLUY01000505
Gammaproteobacteria
Candidatus Thiosymbion oneisti ectosymbiont of Laxus oneistus [FLUY]
9811
9886
+
Glu
CTC
[ENA]
¡û
>W1910208783
FLUZ01001953
Gammaproteobacteria
Candidatus Thiosymbion oneisti ectosymbiont of Laxus oneistus [FLUZ]
12478
12553
+
Glu
CTC
[ENA]
¡û
>WENV079098
AASZ01000457
Olavius algarvensis microbiome from Mediterranean sea
1701
1776
+
Glu
CTC
[ENA]
Identical group No.770955 (1 seq.)
>WENV079092
AASZ01000272
Olavius algarvensis microbiome from Mediterranean sea
4920
4844
-
Glu
CTC
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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