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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Olavius algarvensis microbiome from Mediterranean sea
Anticodon = GCA
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.383493 (2 seq.)
>W1511336896
JRAS01000057
Spirochaetota
Alkalispirochaeta odontotermitis JC202 [JRAS]
17673
17598
-
Cys
GCA
[ENA]
¡û
>WENV079210
AASZ01005226
Olavius algarvensis microbiome from Mediterranean sea
1042
1120
+
Cys
GCA
[ENA]
Identical group No.674636 (46 seq.)
>W1711510639
MLBG01000082
Thermodesulfobacteriota
Desulfovibrio sp. DV [MLBG]
9002
9076
+
Cys
GCA
[ENA]
¡û
>W131099192
AOSV01000012
Thermodesulfobacteriota
Desulfocurvibacter africanus PCS [AOSV]
142509
142435
-
Cys
GCA
[ENA]
¡û
>W131160982
AQXE01000001
Thermodesulfobacteriota
Desulfovibrio oxyclinae DSM 11498 [AQXE]
318463
318537
+
Cys
GCA
[ENA]
¡û
>W131208371
ATHI01000006
Thermodesulfobacteriota
Alkalidesulfovibrio alkalitolerans DSM 16529 [ATHI]
51166
51092
-
Cys
GCA
[ENA]
¡û
>W131208462
ATHV01000019
Thermodesulfobacteriota
Desulfovibrio sp. X2 [ATHV]
109257
109183
-
Cys
GCA
[ENA]
¡û
>W131222861
AUBP01000016
Thermodesulfobacteriota
Desulfovibrio inopinatus DSM 10711 [AUBP]
17321
17247
-
Cys
GCA
[ENA]
¡û
>W131224573
AUCX01000012
Thermodesulfobacteriota
Maridesulfovibrio bastinii DSM 16055 [AUCX]
35494
35568
+
Cys
GCA
[ENA]
¡û
>W131224768
AUDB01000001
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [AUDB]
583720
583794
+
Cys
GCA
[ENA]
¡û
>W131224828
AUDC01000007
Thermodesulfobacteriota
Maridesulfovibrio zosterae DSM 11974 [AUDC]
32133
32207
+
Cys
GCA
[ENA]
¡û
>W131236059
AULZ01000015
Thermodesulfobacteriota
Desulfocurvibacter africanus DSM 2603 [AULZ]
95225
95151
-
Cys
GCA
[ENA]
¡û
>W131236081
AUMA01000003
Thermodesulfobacteriota
Desulfovibrio aminophilus DSM 12254 [AUMA]
61733
61807
+
Cys
GCA
[ENA]
¡û
>WENV180297650
OBJA01057676
[OBJA] soil metagenome; sediment, water from around vicinity
181
107
-
Cys
GCA
[ENA]
¢þ
>W141028002
ALAO01000285
Thermodesulfobacteriota
Solidesulfovibrio magneticus str. Maddingley MBC34 [ALAO]
16213
16139
-
Cys
GCA
[ENA]
¡û
>WENV180317352
OBKJ01125369
[OBKJ] metagenome; hydrothermal vent
134
60
-
Cys
GCA
[ENA]
¢þ
>W141170203
AXXL01000111
Unclassified
delta proteobacterium PSCGC 5342 [AXXL]
2836
2910
+
Cys
GCA
[ENA]
¡û
>WENV181909225
OGYB01029643
[OGYB] human gut metagenome; faeces
862
936
+
Cys
GCA
[ENA]
¢þ
>W141201055
AZAO01000002
Thermodesulfobacteriota
Nitratidesulfovibrio termitidis HI1 [AZAO]
14769
14695
-
Cys
GCA
[ENA]
¡û
>W141277869
JAEX01000007
Thermodesulfobacteriota
Desulfocurvus vexinensis DSM 17965 [JAEX]
116692
116766
+
Cys
GCA
[ENA]
¡û
>W141279148
JAGC01000005
Thermodesulfobacteriota
Solidesulfovibrio magneticus magneticus IFRC170 [JAGC]
318324
318398
+
Cys
GCA
[ENA]
¡û
>WENV183513482
OMKS01005350
[OMKS] sediment metagenome; hot spring sediment
7464
7536
+
Cys
GCA
[ENA]
¢þ
>WENV170715173
LNQE01000221
[LNQE] hydrocarbon metagenome; hydrocarbon-contaminated ditch
2172
2246
+
Cys
GCA
[ENA]
¢þ
>C191045059
CP026538
Thermodesulfobacteriota
Solidesulfovibrio carbinolicus DSM 3852 [CP026538]
3103830
3103904
+
Cys
GCA
-
¡û
>W141731352
JNJA01000005
Thermodesulfobacteriota
Solidesulfovibrio alcoholivorans DSM 5433 [JNJA]
179573
179499
-
Cys
GCA
[ENA]
¡û
>W141776899
JOMJ01000003
Thermodesulfobacteriota
Desulfohalovibrio reitneri L21-Syr-AB [JOMJ]
487390
487316
-
Cys
GCA
[ENA]
¡û
>W1910020643
BDUJ01000001
Thermodesulfobacteriota
Nitratidesulfovibrio sp. HK-II HK-II [BDUJ]
1602598
1602672
+
Cys
GCA
[ENA]
¡û
>C09104133
AP010904
Thermodesulfobacteriota
Solidesulfovibrio magneticus RS-1 [AP010904]
1759467
1759393
-
Cys
GCA
[Ensembl]
¡û
>C09104427
CP001197
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris [CP001197]
9805
9731
-
Cys
GCA
[Ensembl]
¡û
>C141011934
FO203519
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis [FO203519]
3125135
3125061
-
Cys
GCA
-
¡û
>W1910547823
FZOC01000001
Thermodesulfobacteriota
Humidesulfovibrio mexicanus DSM 13116 [FZOC]
310750
310676
-
Cys
GCA
[ENA]
¡û
>W1510021731
BCAG01000003
Thermodesulfobacteriota
Desulfatitalea tepidiphila S28bF [BCAG]
368477
368551
+
Cys
GCA
[ENA]
¡û
>W10112670
ADFE01000036
Thermodesulfobacteriota
Solidesulfovibrio carbinoliphilus FW1012B [ADFE]
22046
21972
-
Cys
GCA
[ENA]
¡û
>W10126145
AECZ01000051
Thermodesulfobacteriota
Solidesulfovibrio fructosivorans JJ [AECZ]
8667
8593
-
Cys
GCA
[ENA]
¡û
>W11115902
ADFE02000003
Thermodesulfobacteriota
Solidesulfovibrio carbinoliphilus FW1012B [ADFE]
929303
929229
-
Cys
GCA
[ENA]
¡û
>W1511365623
JSEH01000004
Thermodesulfobacteriota
Desulfovibrio sp. TomC [JSEH]
199500
199426
-
Cys
GCA
[ENA]
¡û
>W11133406
AECZ01000051
Thermodesulfobacteriota
Solidesulfovibrio fructosivorans JJ [AECZ]
8667
8593
-
Cys
GCA
[ENA]
¡û
>W1511564376
LADR01000054
Thermodesulfobacteriota
Desulfatitalea sp. BRH_c12 [LADR]
26960
26886
-
Cys
GCA
[ENA]
¡û
>W11162707
AFHE01000002
Thermodesulfobacteriota
Desulfocurvibacter africanus str. Walvis Bay [AFHE]
3567449
3567523
+
Cys
GCA
[ENA]
¡û
>W11178846
AGFG01000070
Thermodesulfobacteriota
Desulfovibrio sp. A2 [AGFG]
71042
70968
-
Cys
GCA
[ENA]
¡û
>C121009043
CP003221
Thermodesulfobacteriota
Desulfocurvibacter africanus subsp. africanus str. Walvis Bay [CP003221]
4191802
4191876
+
Cys
GCA
[Ensembl]
¡û
>W1610046047
BBCB01000007
Thermodesulfobacteriota
Salidesulfovibrio brasiliensis JCM 12178 [BBCB]
54309
54383
+
Cys
GCA
[ENA]
¡û
>W1610046122
BBCC01000159
Thermodesulfobacteriota
Desulfosarcina cetonica JCM 12296 [BBCC]
4585
4511
-
Cys
GCA
[ENA]
¡û
>W121036488
AHMC01000022
Thermodesulfobacteriota
Desulfovibrio sp. U5L [AHMC]
7890
7964
+
Cys
GCA
[ENA]
¡û
>C131018116
FO203522
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [FO203522]
3125135
3125061
-
Cys
GCA
[Ensembl]
¡û
>WENV079106
AASZ01000694
Olavius algarvensis microbiome from Mediterranean sea
9319
9395
+
Cys
GCA
[ENA]
>W1710042843
BBCB01000007
Thermodesulfobacteriota
Salidesulfovibrio brasiliensis JCM 12178 [BBCB]
54309
54383
+
Cys
GCA
[ENA]
¡û
>W1710042918
BBCC01000159
Thermodesulfobacteriota
Desulfosarcina cetonica JCM 12296 [BBCC]
4585
4511
-
Cys
GCA
[ENA]
¡û
Identical group No.770956 (1 seq.)
>WENV079125
AASZ01001144
Olavius algarvensis microbiome from Mediterranean sea
86
160
+
Cys
GCA
[ENA]
Identical group No.770958 (1 seq.)
>WENV079196
AASZ01003570
Olavius algarvensis microbiome from Mediterranean sea
1320
1246
-
Cys
GCA
[ENA]
Identical group No.783106 (49 seq.)
>WENV180059023
MPLX02086232
[MPLX] marine metagenome; 120 m water sample filtered on 0.2 um supor filter
585
512
-
Cys
GCA
[ENA]
¢þ
>WENV180060809
MPLX02190368
[MPLX] marine metagenome; 120 m water sample filtered on 0.2 um supor filter
2137
2064
-
Cys
GCA
[ENA]
¢þ
>WENV180062025
MPLX02260279
[MPLX] marine metagenome; 120 m water sample filtered on 0.2 um supor filter
629
556
-
Cys
GCA
[ENA]
¢þ
>WENV180062889
MPLX02315920
[MPLX] marine metagenome; 120 m water sample filtered on 0.2 um supor filter
39
112
+
Cys
GCA
[ENA]
¢þ
>WENV180063055
MPLX02328158
[MPLX] marine metagenome; 120 m water sample filtered on 0.2 um supor filter
739
666
-
Cys
GCA
[ENA]
¢þ
>WENV180065939
MPLY02097792
[MPLY] marine metagenome; 140 m water sample filtered on 0.2 um supor filter
1429
1502
+
Cys
GCA
[ENA]
¢þ
>WENV180066139
MPLY02111336
[MPLY] marine metagenome; 140 m water sample filtered on 0.2 um supor filter
46
119
+
Cys
GCA
[ENA]
¢þ
>WENV180066967
MPLY02167339
[MPLY] marine metagenome; 140 m water sample filtered on 0.2 um supor filter
1496
1423
-
Cys
GCA
[ENA]
¢þ
>WENV180068199
MPLZ02035777
[MPLZ] marine metagenome; 160 m water sample filtered on 0.2 um supor filter
879
806
-
Cys
GCA
[ENA]
¢þ
>WENV180069109
MPLZ02086389
[MPLZ] marine metagenome; 160 m water sample filtered on 0.2 um supor filter
2378
2305
-
Cys
GCA
[ENA]
¢þ
>WENV180069940
MPLZ02139591
[MPLZ] marine metagenome; 160 m water sample filtered on 0.2 um supor filter
4758
4685
-
Cys
GCA
[ENA]
¢þ
>WENV180072408
MPMA02018143
[MPMA] marine metagenome; 180 m water sample filtered on 0.2 um supor filter
1607
1534
-
Cys
GCA
[ENA]
¢þ
>WENV180073168
MPMA02064374
[MPMA] marine metagenome; 180 m water sample filtered on 0.2 um supor filter
3822
3895
+
Cys
GCA
[ENA]
¢þ
>WENV180073231
MPMA02068419
[MPMA] marine metagenome; 180 m water sample filtered on 0.2 um supor filter
4748
4675
-
Cys
GCA
[ENA]
¢þ
>WENV180076767
MPMB02014019
[MPMB] marine metagenome; 300 m water sample filtered on 0.2 um supor filter
6030
5957
-
Cys
GCA
[ENA]
¢þ
>WENV180079342
MPMB02155035
[MPMB] marine metagenome; 300 m water sample filtered on 0.2 um supor filter
186
259
+
Cys
GCA
[ENA]
¢þ
>WENV180079344
MPMB02155196
[MPMB] marine metagenome; 300 m water sample filtered on 0.2 um supor filter
186
259
+
Cys
GCA
[ENA]
¢þ
>WENV180079575
MPMB02169600
[MPMB] marine metagenome; 300 m water sample filtered on 0.2 um supor filter
4
77
+
Cys
GCA
[ENA]
¢þ
>WENV180079644
MPMB02174077
[MPMB] marine metagenome; 300 m water sample filtered on 0.2 um supor filter
130
57
-
Cys
GCA
[ENA]
¢þ
>WENV180079648
MPMB02174313
[MPMB] marine metagenome; 300 m water sample filtered on 0.2 um supor filter
21260
21333
+
Cys
GCA
[ENA]
¢þ
>WENV180079698
MPMB02178001
[MPMB] marine metagenome; 300 m water sample filtered on 0.2 um supor filter
180
253
+
Cys
GCA
[ENA]
¢þ
>WENV180082093
MPMC02183919
[MPMC] marine metagenome; 100 m water sample filtered on 30 um supor filter
233
306
+
Cys
GCA
[ENA]
¢þ
>WENV180086091
MPMD02420117
[MPMD] marine metagenome; 120 m water sample filtered on 30 um supor filter
8957
9030
+
Cys
GCA
[ENA]
¢þ
>WENV180091032
MPMF02170989
[MPMF] marine metagenome; 120 m water sample prefiltered with 30 um filter, filtered on to 0.2 um supor filter
67
140
+
Cys
GCA
[ENA]
¢þ
>WENV180091156
MPMF02178717
[MPMF] marine metagenome; 120 m water sample prefiltered with 30 um filter, filtered on to 0.2 um supor filter
67
140
+
Cys
GCA
[ENA]
¢þ
>WENV180091261
MPMF02184901
[MPMF] marine metagenome; 120 m water sample prefiltered with 30 um filter, filtered on to 0.2 um supor filter
1634
1561
-
Cys
GCA
[ENA]
¢þ
>WENV180091729
MPMF02216549
[MPMF] marine metagenome; 120 m water sample prefiltered with 30 um filter, filtered on to 0.2 um supor filter
3192
3119
-
Cys
GCA
[ENA]
¢þ
>WENV180092671
MPMF02274564
[MPMF] marine metagenome; 120 m water sample prefiltered with 30 um filter, filtered on to 0.2 um supor filter
75
2
-
Cys
GCA
[ENA]
¢þ
>WENV181307276
OFIP01010477
[OFIP] marine metagenome; seawater
382
309
-
Cys
GCA
[ENA]
¢þ
>WENV181308638
OFIT01003823
[OFIT] marine metagenome; seawater
477
404
-
Cys
GCA
[ENA]
¢þ
>WENV183798108
PVBE010390139
[PVBE] marine metagenome; water
3185
3258
+
Cys
GCA
[ENA]
¢þ
>WENV183798317
PVBE010407624
[PVBE] marine metagenome; water
83
10
-
Cys
GCA
[ENA]
¢þ
>WENV183800815
PVBE010619469
[PVBE] marine metagenome; water
437
510
+
Cys
GCA
[ENA]
¢þ
>WENV183806715
PVBE011140963
[PVBE] marine metagenome; water
1376
1303
-
Cys
GCA
[ENA]
¢þ
>WENV183811564
PVBE011593473
[PVBE] marine metagenome; water
4877
4950
+
Cys
GCA
[ENA]
¢þ
>WENV170321643
CESR01068508
[CESR] marine metagenome genome assembly TARA_100_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
272
345
+
Cys
GCA
[ENA]
¢þ
>WENV170602183
FUWD010220319
[FUWD] metagenome; unknown
381
308
-
Cys
GCA
[ENA]
¢þ
>WENV170603218
FUWD010296068
[FUWD] metagenome; unknown
246
173
-
Cys
GCA
[ENA]
¢þ
>WENV170611087
FUWD012199790
[FUWD] metagenome; unknown
76
3
-
Cys
GCA
[ENA]
¢þ
>WENV170620907
FUWD013042904
[FUWD] metagenome; unknown
247
174
-
Cys
GCA
[ENA]
¢þ
>WENV170626587
FUWD013226079
[FUWD] metagenome; unknown
899
826
-
Cys
GCA
[ENA]
¢þ
>WENV170629064
FUWD013259895
[FUWD] metagenome; unknown
247
174
-
Cys
GCA
[ENA]
¢þ
>WENV170763628
LWDU01014667
[LWDU] hydrothermal vent metagenome; deep sea hydrothermal plume seawater
2467
2394
-
Cys
GCA
[ENA]
¢þ
>WENV170888245
MDTC01254166
[MDTC] marine metagenome; seawater
4
77
+
Cys
GCA
[ENA]
¢þ
>WENV170947108
MDUS01023408
[MDUS] marine metagenome; 300 m water sample from station 6
99
26
-
Cys
GCA
[ENA]
¢þ
>WENV170947219
MDUS01035305
[MDUS] marine metagenome; 300 m water sample from station 6
536
609
+
Cys
GCA
[ENA]
¢þ
>WENV170947232
MDUS01037002
[MDUS] marine metagenome; 300 m water sample from station 6
1
74
+
Cys
GCA
[ENA]
¢þ
>WENV079078
AASZ01000071
Olavius algarvensis microbiome from Mediterranean sea
1251
1324
+
Cys
GCA
[ENA]
>WENV079208
AASZ01005111
Olavius algarvensis microbiome from Mediterranean sea
293
366
+
Cys
GCA
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK